Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 4.2e-259 897.5 452 100.0
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 1.8e-121 440.3 471 48.4
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 3.1e-121 439.5 460 50.0
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 9.1e-121 438.0 455 50.3
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 3.6e-117 426.0 459 47.7
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 3.0e-116 422.9 453 48.6
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 6.7e-116 421.8 464 47.6
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 2.0e-115 420.2 460 48.5
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 2.0e-115 420.2 453 47.9
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 3.3e-115 419.5 464 47.4
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 4.4e-115 419.1 454 49.1
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 1.7e-114 417.2 464 47.4
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 7.0e-113 411.8 468 47.6
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 2.0e-112 410.2 468 48.3
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 2.0e-112 410.2 440 48.2
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 1.0e-111 407.9 454 47.4
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 2.9e-111 406.4 474 46.6
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 9.4e-110 401.4 488 46.1
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 1.4e-108 397.5 484 44.0
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 1.4e-108 397.5 454 45.8
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.0e-104 383.6 437 45.3
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.3e-103 380.9 437 45.1
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 1.3e-103 380.9 491 43.4
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 2.2e-103 380.2 460 44.8
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 4.2e-102 375.9 447 45.4
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 3.6e-101 372.9 448 43.5
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 3.4e-99 366.3 481 43.9
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 5.4e-97 359.0 455 44.8
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.5e-94 350.9 425 43.8
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 2.1e-93 347.1 465 41.7
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 3.6e-93 346.3 419 44.6
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 6.8e-92 342.0 439 42.8
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 1.3e-90 337.8 493 38.7
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 7.0e-89 332.0 446 40.1
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 5.9e-88 328.9 432 40.7
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 5.9e-88 328.9 464 40.1
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 1.0e-87 328.2 465 40.0
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 1.3e-87 327.8 367 47.4
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.9e-86 323.9 368 49.7
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 4.3e-86 322.8 368 49.5
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 9.5e-86 321.6 478 39.3
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 1.2e-85 321.2 447 39.1
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 2.3e-84 317.0 447 39.1
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 1.2e-83 314.7 447 38.7
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 7.5e-83 312.0 447 38.5
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 6.4e-82 308.9 442 39.4
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 8.3e-82 308.5 448 38.2
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 8.3e-82 308.5 448 38.2
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 5.4e-81 305.8 447 38.0
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 7.0e-81 305.4 447 38.5
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 3.5e-80 303.1 447 37.6
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 1.6e-77 294.3 398 41.0
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 1.4e-76 291.2 448 37.1
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 1.3e-74 284.6 466 36.1
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 4.1e-73 279.6 312 49.7
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 7.0e-73 278.9 457 38.3
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 2.7e-72 276.9 457 38.1
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.5e-70 270.4 444 36.3
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 3.3e-70 270.0 398 38.9
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 5.8e-67 259.2 408 39.7
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 1.7e-66 257.7 465 34.8
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.1e-64 250.8 444 34.9
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 2.7e-64 250.4 398 36.9
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 3.5e-64 250.0 457 33.9
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 1.9e-62 244.2 447 34.7
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 2.0e-59 234.2 208 50.5
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 6.4e-58 229.2 390 34.9
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 5.4e-57 226.1 244 51.2
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 1.3e-50 204.9 245 49.8
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 3.5e-48 196.8 291 40.9
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 1.4e-41 174.9 235 43.8
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 1.1e-36 158.7 242 40.1
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 2.5e-30 137.5 295 30.5
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 6.9e-28 129.4 89 68.5
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 3.1e-20 104.0 392 25.3
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 1.2e-19 102.1 435 25.1
Gohir.D11G218200 Gossypium hirsutum HOM05D007808 ORTHO05D009895 3.3e-14 84.0 143 36.4
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 3.7e-13 80.5 55 56.4
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 8.2e-13 79.3 53 58.5
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 1.8e-12 78.2 242 25.6
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 2.2e-10 71.2 131 29.8
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 2.5e-09 67.8 54 51.9


User provided reference genes

Program Settings