Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 5.4e-150 534.3 264 100.0
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 8.3e-82 307.8 253 63.6
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 1.8e-81 306.6 258 63.6
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 4.1e-81 305.4 255 63.1
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 1.3e-79 300.4 237 67.1
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 4.3e-78 295.4 259 60.2
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 5.6e-78 295.0 210 70.0
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 3.6e-77 292.4 258 59.3
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 8.0e-77 291.2 199 70.9
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 1.8e-76 290.0 256 60.5
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 2.3e-76 289.7 185 74.1
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 8.9e-76 287.7 197 73.6
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.2e-75 287.3 235 61.3
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 2.6e-75 286.2 240 62.5
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 2.6e-75 286.2 204 66.2
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 7.5e-75 284.6 240 61.7
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 7.5e-75 284.6 225 62.2
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 2.2e-74 283.1 240 62.1
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 3.7e-74 282.3 211 66.8
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 6.4e-74 281.6 237 62.9
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 2.4e-73 279.6 257 59.9
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 3.2e-73 279.3 218 64.7
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 5.4e-73 278.5 203 68.0
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 1.2e-72 277.3 209 64.6
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 1.6e-72 276.9 204 65.7
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 2.0e-72 276.6 191 69.1
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 2.7e-72 276.2 204 65.2
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.7e-72 276.2 204 65.7
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 3.5e-72 275.8 231 60.6
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 1.7e-71 273.5 234 61.1
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 3.0e-71 272.7 204 64.7
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 3.0e-71 272.7 229 58.1
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 3.9e-71 272.3 231 60.6
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 3.9e-71 272.3 204 63.2
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 5.0e-71 271.9 204 63.2
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 6.6e-71 271.6 239 59.4
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 8.6e-71 271.2 204 63.2
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 1.1e-70 270.8 229 58.1
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 1.5e-70 270.4 256 53.9
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.5e-70 270.4 204 64.7
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 1.5e-70 270.4 229 58.1
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.3e-70 268.9 204 64.2
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 4.3e-70 268.9 230 60.4
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 4.3e-70 268.9 204 63.7
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 1.2e-69 267.3 251 57.0
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 1.2e-69 267.3 187 70.1
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.6e-69 266.9 203 64.5
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 2.1e-69 266.5 228 59.2
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 2.1e-69 266.5 195 67.2
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 2.1e-69 266.5 235 59.1
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 2.8e-69 266.2 182 70.9
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 2.8e-69 266.2 182 70.9
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 2.8e-69 266.2 230 59.6
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 4.7e-69 265.4 190 68.4
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 6.2e-69 265.0 182 70.3
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.0e-68 264.2 207 64.3
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 1.0e-68 264.2 182 70.3
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 1.8e-68 263.5 204 63.2
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 1.8e-68 263.5 218 60.1
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 2.3e-68 263.1 187 69.0
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 8.9e-68 261.2 181 67.4
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 3.4e-67 259.2 204 62.7
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 4.4e-67 258.8 210 61.9
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 4.4e-67 258.8 210 61.9
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.3e-66 257.3 212 61.8
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 2.2e-66 256.5 188 67.0
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 2.9e-66 256.1 204 62.7
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 3.2e-65 252.7 203 60.1
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 5.4e-65 251.9 204 61.3
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 1.2e-64 250.8 196 61.2
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 2.0e-64 250.0 205 60.0
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 2.0e-64 250.0 200 63.0
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 4.6e-64 248.8 199 63.3
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 1.3e-63 247.3 204 59.3
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 2.5e-62 243.0 182 64.3
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 9.5e-62 241.1 206 59.7
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 3.6e-61 239.2 206 59.2
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 3.6e-61 239.2 206 59.2
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 4.7e-61 238.8 206 58.7
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 4.7e-61 238.8 206 58.7
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 6.2e-61 238.4 184 60.9
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 2.6e-59 233.0 248 52.8
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 3.7e-58 229.2 182 61.0
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 8.3e-58 228.0 184 61.4
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 3.0e-55 219.5 197 53.8
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 4.0e-52 209.1 251 46.6
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 4.0e-52 209.1 188 53.2
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 8.9e-52 208.0 204 54.9
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 2.6e-51 206.5 192 53.6
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 6.4e-50 201.8 146 65.8
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 3.2e-49 199.5 183 60.1
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 7.8e-48 194.9 187 47.6
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 8.6e-47 191.4 236 46.2
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 9.9e-43 177.9 188 48.9
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 1.3e-42 177.6 219 43.4
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.2e-40 171.0 138 63.8
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 1.2e-40 171.0 121 66.9
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 8.7e-39 164.9 115 67.0
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 5.3e-36 155.6 182 42.3
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 3.5e-32 142.9 216 37.5
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 6.6e-31 138.7 152 48.0
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.6e-29 134.0 96 63.5
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 6.2e-29 132.1 140 51.4
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 4.5e-27 125.9 91 64.8
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.9e-26 123.2 90 66.7
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.1e-22 111.3 183 33.3
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 7.4e-22 108.6 181 30.9
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.1e-20 103.2 183 32.2
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 3.2e-17 93.2 103 50.5
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 2.7e-16 90.1 115 40.9
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 3.0e-15 86.7 168 31.0
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.5e-14 84.3 182 30.8
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 4.8e-13 79.3 72 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.0e-11 73.9 229 26.2
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 5.5e-09 65.9 57 59.6
Pp3c15_7020 Physcomitrium patens HOM05D003252 ORTHO05D003640 1.6e-08 64.3 221 23.5
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 3.9e-07 59.7 203 25.1
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 5.1e-07 59.3 196 25.5
Cfa003021 Carpinus fangiana HOM05D003252 ORTHO05D003640 1.1e-06 58.2 189 25.4
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 1.9e-06 57.4 171 26.3
Mapoly0152s0021 Marchantia polymorpha HOM05D006617 ORTHO05D003640 5.7e-06 55.8 190 21.6


User provided reference genes

Program Settings