Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 0.0e+00 1082.0 562 100.0
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 1.3e-265 919.5 562 82.7
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 3.7e-265 917.9 562 82.6
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 4.9e-265 917.5 562 82.9
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 4.1e-264 914.4 562 82.2
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 3.3e-261 904.8 563 82.8
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.8e-260 901.7 562 82.4
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 8.9e-259 896.7 562 80.4
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.0e-258 895.6 562 81.7
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 3.4e-258 894.8 562 81.0
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 4.4e-258 894.4 562 81.5
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 3.7e-257 891.3 601 76.7
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.1e-256 889.8 562 80.6
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.1e-256 889.8 562 80.6
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 1.1e-256 889.8 562 81.1
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 4.6e-255 884.4 561 79.5
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.0e-254 883.2 562 80.8
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.3e-254 882.9 562 80.4
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 5.0e-254 880.9 562 80.1
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 1.9e-253 879.0 562 80.6
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 1.9e-253 879.0 562 80.8
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 2.5e-253 878.6 562 79.2
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.8e-251 872.5 562 79.7
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 2.3e-251 872.1 562 79.0
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 5.2e-251 870.9 562 79.9
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 4.4e-250 867.8 562 78.1
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.7e-249 865.9 562 80.2
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 2.9e-249 865.1 562 78.6
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 8.3e-249 863.6 562 78.8
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 1.4e-248 862.8 563 79.0
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 3.2e-248 861.7 562 78.3
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 4.1e-248 861.3 562 78.6
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 5.4e-248 860.9 562 78.3
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 7.1e-248 860.5 562 78.8
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.7e-246 855.9 558 79.0
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 2.3e-246 855.5 627 72.2
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 2.3e-246 855.5 562 78.3
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 3.9e-246 854.7 562 78.1
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 4.3e-245 851.3 562 78.8
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 1.2e-244 849.7 562 76.9
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 2.1e-244 849.0 563 78.2
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 4.0e-243 844.7 562 76.7
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 6.8e-243 844.0 562 77.6
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 3.7e-241 838.2 515 81.6
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 3.7e-241 838.2 562 76.7
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 1.9e-240 835.9 576 75.5
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 3.2e-240 835.1 562 77.6
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.2e-240 835.1 565 77.2
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 5.4e-240 834.3 542 78.4
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.7e-239 832.0 557 77.6
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 1.3e-238 829.7 562 76.9
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 5.1e-238 827.8 562 76.0
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.9e-237 825.9 560 77.1
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 3.3e-237 825.1 562 75.6
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 3.3e-237 825.1 562 75.6
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 2.1e-236 822.4 613 71.8
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 4.4e-234 814.7 560 74.6
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 9.9e-234 813.5 562 74.7
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 8.4e-233 810.4 540 76.3
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 8.4e-233 810.4 565 74.0
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.4e-232 807.7 542 78.2
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 7.1e-232 807.4 566 73.7
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 4.6e-231 804.7 562 74.6
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.3e-230 802.4 576 74.3
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 1.4e-227 793.1 513 78.6
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 4.0e-227 791.6 562 73.8
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 5.3e-227 791.2 562 74.4
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 3.8e-225 785.0 562 74.0
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 3.8e-225 785.0 649 66.1
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 6.4e-225 784.3 563 73.7
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 6.4e-225 784.3 563 73.7
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.1e-224 783.5 562 71.7
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 1.9e-224 782.7 562 73.3
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.3e-222 776.5 562 73.0
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 3.9e-222 775.0 515 77.7
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 2.5e-221 772.3 562 71.7
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 3.3e-221 771.9 563 69.4
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.3e-221 771.9 563 72.8
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.3e-221 771.9 562 72.8
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 7.3e-221 770.8 562 71.2
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 1.6e-220 769.6 577 70.9
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 1.4e-219 766.5 544 73.9
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 9.0e-219 763.8 562 69.8
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.3e-217 760.0 533 74.1
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 2.2e-217 759.2 562 72.4
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 4.9e-217 758.1 562 69.4
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 3.2e-216 755.4 513 75.2
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.6e-212 743.0 533 72.0
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 5.3e-203 711.4 595 66.2
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 2.4e-195 686.0 476 73.5
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.5e-184 649.4 393 84.2
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 9.7e-181 637.5 563 59.1
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 1.7e-180 636.7 455 69.5
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 8.5e-177 624.4 563 58.3
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 9.7e-173 610.9 433 70.2
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 2.8e-172 609.4 569 57.6
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 8.8e-166 587.8 555 59.5
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 2.4e-163 579.7 563 55.1
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 7.0e-163 578.2 566 53.7
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 6.4e-148 528.5 330 82.7
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 8.3e-148 528.1 382 73.3
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.2e-141 507.7 524 58.8
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 1.1e-134 484.6 306 83.0
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 6.6e-129 465.3 341 68.9
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 3.3e-128 463.0 349 68.8
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 8.9e-126 454.9 356 61.5
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 6.2e-103 379.0 261 70.9
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 2.9e-84 317.0 550 37.5
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 1.5e-77 294.7 198 74.7
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 3.6e-74 283.5 210 74.3
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.7e-63 248.1 200 69.5
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 2.8e-63 247.3 145 78.6
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 3.0e-57 227.3 182 59.9
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-52 211.8 130 80.0
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 7.0e-46 189.5 160 63.8
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.2e-32 145.6 90 72.2
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 7.5e-32 142.9 180 48.3
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.1e-30 139.0 157 52.9
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.1e-30 139.0 157 52.9
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 2.4e-30 137.9 178 47.2
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.2e-30 136.0 90 72.2
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 2.3e-28 131.3 131 61.1
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 6.2e-26 123.2 167 46.7
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-23 115.5 130 50.0
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 1.9e-22 111.7 77 68.8
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 4.6e-21 107.1 58 89.7
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 1.8e-17 95.1 87 62.1
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 4.4e-16 90.5 81 55.6
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.5e-16 89.7 90 54.4
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 5.8e-08 63.5 47 59.6
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 9.2e-06 56.2 47 68.1


User provided reference genes

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