Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 4.4e-127 458.0 234 100.0
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.2e-87 327.0 231 74.0
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.0e-87 326.2 238 72.7
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 7.6e-87 324.3 232 73.3
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.7e-86 323.2 232 73.7
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 2.2e-86 322.8 231 73.2
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 6.4e-86 321.2 232 73.3
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 8.4e-86 320.9 232 72.4
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 1.1e-85 320.5 241 70.5
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.1e-85 320.5 231 72.7
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.6e-84 316.6 226 73.0
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 8.7e-83 310.8 233 70.4
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.3e-82 308.9 235 69.8
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.3e-82 308.9 228 70.2
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 4.3e-82 308.5 239 68.6
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 5.6e-82 308.1 231 70.1
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 7.3e-82 307.8 237 66.7
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.6e-81 306.6 239 66.1
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 6.2e-81 304.7 236 69.5
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 8.1e-81 304.3 238 68.1
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 2.4e-80 302.8 228 68.4
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 5.3e-80 301.6 233 69.1
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 9.0e-80 300.8 235 68.5
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 9.0e-80 300.8 233 68.2
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 9.0e-80 300.8 235 67.7
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.2e-79 300.4 229 68.6
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.5e-79 300.1 237 67.1
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.0e-79 299.7 234 69.2
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 2.0e-79 299.7 232 67.2
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 3.4e-79 298.9 237 65.8
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 3.4e-79 298.9 230 67.0
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 3.4e-79 298.9 234 65.8
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 4.5e-79 298.5 234 68.4
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 4.5e-79 298.5 234 68.4
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 4.5e-79 298.5 242 67.4
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 5.8e-79 298.1 232 68.1
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 9.9e-79 297.4 234 68.4
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.3e-78 297.0 202 73.3
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 2.2e-78 296.2 234 67.5
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 2.2e-78 296.2 232 67.7
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.9e-78 295.8 235 68.9
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.9e-78 295.8 240 65.0
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 3.8e-78 295.4 232 67.7
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 4.9e-78 295.0 228 68.0
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.9e-77 293.1 236 66.9
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 9.3e-77 290.8 227 67.0
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.7e-76 289.3 231 65.4
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 2.7e-76 289.3 236 64.0
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 3.5e-76 288.9 234 65.0
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.3e-75 287.0 231 66.2
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.0e-75 285.8 228 68.9
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 6.7e-75 284.6 234 65.4
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 8.7e-75 284.3 231 64.1
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.5e-74 283.5 219 65.8
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.9e-74 283.1 215 67.4
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.3e-74 282.3 232 65.1
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 4.3e-74 282.0 189 73.5
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 5.6e-74 281.6 231 63.2
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.4e-74 281.2 219 65.3
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 7.4e-74 281.2 227 65.2
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 9.6e-74 280.8 180 72.8
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 9.6e-74 280.8 180 72.8
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.3e-73 280.4 233 64.4
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 1.6e-73 280.0 236 63.6
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.6e-73 280.0 226 65.0
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 3.6e-73 278.9 237 62.4
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.1e-72 277.3 189 72.5
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.4e-72 276.9 232 64.2
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 2.4e-72 276.2 207 67.1
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 4.0e-72 275.4 210 68.1
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.9e-72 274.6 207 68.6
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 6.9e-72 274.6 229 63.8
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 9.0e-72 274.2 229 63.8
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.2e-71 273.9 217 66.4
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.5e-71 273.5 180 71.7
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.5e-71 273.5 180 71.7
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 2.0e-71 273.1 236 61.9
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 4.5e-71 271.9 231 62.8
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 5.8e-71 271.6 229 63.3
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 5.8e-71 271.6 233 62.2
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 9.9e-71 270.8 229 63.3
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.3e-70 270.4 222 64.9
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.2e-70 269.6 229 62.4
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 2.9e-70 269.2 209 65.6
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 3.8e-70 268.9 229 63.3
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 3.8e-70 268.9 229 62.4
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 6.4e-70 268.1 229 61.6
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.4e-70 268.1 232 62.1
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 8.4e-70 267.7 225 63.6
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 8.4e-70 267.7 233 61.4
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.1e-69 267.3 229 62.9
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 9.3e-69 264.2 179 71.5
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 7.9e-68 261.2 224 61.6
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 1.0e-67 260.8 180 68.9
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 1.5e-66 256.9 208 65.4
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 6.9e-64 248.1 194 64.4
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 6.9e-64 248.1 183 67.2
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 2.0e-63 246.5 213 61.0
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.6e-63 246.1 176 69.3
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 5.8e-63 245.0 192 61.5
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 7.6e-63 244.6 211 60.7
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.0e-62 244.2 233 60.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.2e-61 239.2 190 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 5.5e-61 238.4 202 59.4
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.8e-59 233.4 193 62.2
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 5.3e-56 221.9 171 69.6
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.9e-53 213.4 145 69.7
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 4.6e-52 208.8 234 51.7
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 9.7e-50 201.1 235 51.9
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 6.9e-48 194.9 146 63.7
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.2e-47 194.1 146 63.0
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 2.6e-47 193.0 147 61.2
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.5e-47 192.2 147 61.2
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 7.7e-47 191.4 147 60.5
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.7e-46 190.3 166 56.0
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 2.2e-46 189.9 147 59.9
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 2.2e-46 189.9 147 59.9
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 2.2e-46 189.9 147 59.9
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.2e-46 189.9 146 61.6
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 2.9e-46 189.5 147 59.9
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 2.9e-46 189.5 147 59.9
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.9e-46 189.5 146 60.3
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.4e-45 187.2 146 60.3
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.5e-42 177.2 145 55.9
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.7e-41 173.7 169 49.1
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 1.1e-40 171.0 184 47.8
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.8e-38 162.5 161 48.4
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.1e-37 161.0 102 77.5
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.5e-34 150.6 179 46.4
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 3.3e-34 149.4 103 66.0
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.3e-34 149.4 235 44.3
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 3.5e-31 139.4 105 62.9
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.1e-28 130.2 167 44.3
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.0e-27 127.9 131 51.1
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.0e-27 127.9 160 43.1
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 4.0e-27 125.9 133 57.1
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 2.6e-26 123.2 88 67.0
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.7e-26 122.1 170 41.2
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.7e-25 120.6 143 44.1
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 5.3e-24 115.5 229 38.0
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 3.2e-21 106.3 155 38.1
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 9.4e-21 104.8 211 39.8
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 8.0e-20 101.7 176 35.8
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 6.8e-19 98.6 102 52.0
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 4.4e-18 95.9 183 31.1
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.7e-17 94.0 101 59.4
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 6.3e-17 92.0 71 57.7
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.6e-15 87.4 68 64.7
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 5.0e-14 82.4 104 44.2
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 1.7e-09 67.4 48 66.7
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-07 61.2 117 36.8
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.2e-07 61.2 59 50.8
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.7e-07 60.1 84 40.5


User provided reference genes

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