Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.9e-221 771.5 382 100.0
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 5.8e-177 624.4 380 80.3
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 7.8e-174 614.0 381 79.8
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 3.9e-173 611.7 380 79.7
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 6.6e-173 610.9 380 79.5
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 8.6e-173 610.5 384 78.9
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 5.6e-172 607.8 384 78.6
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 7.3e-172 607.4 382 79.1
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 9.5e-172 607.1 380 78.7
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.8e-171 605.5 379 78.9
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 3.6e-171 605.1 379 78.6
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 4.7e-171 604.7 385 78.7
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.1e-170 603.6 381 79.5
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.2e-169 600.1 380 78.9
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 2.6e-169 599.0 381 77.4
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 4.4e-169 598.2 382 78.3
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.4e-169 598.2 381 77.4
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 4.4e-169 598.2 382 78.5
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 7.6e-169 597.4 382 78.0
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.7e-168 596.3 405 73.1
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-167 593.6 381 76.9
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.4e-167 593.2 381 77.7
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.4e-167 592.4 379 77.0
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 3.2e-167 592.0 378 78.0
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.2e-166 590.1 381 77.7
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 2.7e-166 589.0 382 75.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 6.0e-166 587.8 345 82.0
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 6.0e-166 587.8 381 75.9
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.8e-166 587.4 395 74.4
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.3e-165 586.6 382 77.2
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.3e-165 586.6 380 77.4
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.7e-165 586.3 382 76.2
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.7e-165 586.3 380 77.6
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 3.0e-165 585.5 381 76.4
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 3.9e-165 585.1 382 75.1
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 5.1e-165 584.7 381 76.6
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 5.1e-165 584.7 376 76.1
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 6.6e-165 584.3 382 76.7
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 6.6e-165 584.3 380 76.1
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.9e-164 582.8 381 76.1
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 2.5e-164 582.4 320 85.9
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 5.6e-164 581.3 399 73.9
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.6e-163 579.7 380 76.3
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.6e-163 579.7 404 73.3
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 3.6e-163 578.6 383 75.5
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.1e-162 577.0 368 77.2
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 2.4e-162 575.9 381 75.1
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.0e-162 575.1 366 77.0
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 9.0e-162 573.9 318 85.2
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 5.8e-161 571.2 378 73.3
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 7.6e-161 570.9 379 73.6
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 7.6e-161 570.9 353 79.3
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 9.9e-161 570.5 380 74.7
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.7e-160 569.7 380 73.4
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.2e-160 569.3 382 72.3
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.9e-160 568.9 383 73.1
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.9e-160 568.9 380 75.5
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 6.4e-160 567.8 379 72.8
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.4e-159 566.6 381 75.3
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.9e-159 566.2 380 73.7
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 4.2e-159 565.1 380 74.2
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 9.3e-159 563.9 381 72.2
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 9.3e-159 563.9 380 71.6
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 1.6e-158 563.1 383 72.8
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.5e-158 562.0 307 87.0
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 3.5e-158 562.0 382 72.3
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 4.6e-158 561.6 333 81.4
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 4.6e-158 561.6 332 79.2
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 6.0e-158 561.2 382 71.5
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 7.8e-158 560.8 380 73.9
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.0e-157 560.5 382 72.3
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.0e-157 558.9 366 73.5
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 6.6e-157 557.8 381 72.7
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 8.7e-157 557.4 316 80.7
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.9e-156 556.2 380 71.1
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.9e-156 556.2 384 70.8
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.3e-156 555.4 382 71.5
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 9.6e-156 553.9 381 71.7
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 3.6e-155 552.0 380 70.8
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 3.6e-155 552.0 380 70.8
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 3.1e-154 548.9 382 70.2
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 5.3e-154 548.1 337 77.2
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 6.9e-154 547.7 380 70.3
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 6.9e-154 547.7 382 69.9
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.5e-153 546.6 379 69.1
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.6e-153 545.8 380 70.5
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.4e-153 545.4 379 70.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 4.5e-153 545.0 388 72.9
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 5.8e-153 544.7 380 70.0
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 5.8e-153 544.7 380 70.0
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 3.8e-152 542.0 380 69.5
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 4.9e-152 541.6 318 79.9
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-151 540.0 380 69.2
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.4e-151 540.0 317 82.0
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.4e-151 539.3 408 68.4
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 3.2e-151 538.9 380 69.2
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 3.2e-151 538.9 318 78.9
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 5.4e-151 538.1 318 79.6
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 5.4e-151 538.1 327 77.4
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 2.7e-150 535.8 350 76.6
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.5e-150 535.4 385 68.8
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 6.0e-150 534.6 315 77.5
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 7.9e-150 534.3 380 69.2
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.9e-150 534.3 357 72.8
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-149 532.7 381 68.0
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 3.0e-149 532.3 348 70.7
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 2.1e-147 526.2 379 67.5
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.2e-145 520.4 315 76.2
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.2e-145 520.4 317 74.4
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 1.5e-145 520.0 380 68.9
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 4.2e-143 511.9 350 74.0
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 1.2e-142 510.4 378 68.0
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.6e-142 510.0 316 73.4
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.1e-142 509.6 326 73.6
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 5.7e-140 501.5 315 74.3
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 7.4e-140 501.1 349 71.6
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 2.1e-139 499.6 381 66.7
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 3.7e-139 498.8 304 73.7
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.1e-138 497.3 345 66.7
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 6.5e-136 488.0 378 63.8
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 7.1e-135 484.6 349 70.5
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.7e-134 482.6 326 74.5
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 4.6e-134 481.9 325 70.8
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 8.7e-133 477.6 354 68.6
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 2.9e-128 462.6 385 62.6
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 8.5e-128 461.1 293 71.0
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 4.6e-126 455.3 351 68.7
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 6.1e-126 454.9 257 80.9
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 6.1e-126 454.9 257 80.9
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.3e-123 447.2 241 87.6
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 6.9e-122 441.4 296 64.5
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 8.5e-120 434.5 327 70.0
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 7.2e-119 431.4 317 62.5
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 7.9e-118 427.9 265 77.4
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 2.0e-113 413.3 333 61.3
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 3.5e-113 412.5 335 57.9
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 4.5e-113 412.1 298 72.1
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 2.2e-107 393.3 333 55.6
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 4.1e-106 389.0 297 62.6
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.3e-106 388.7 385 55.3
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 7.7e-105 384.8 233 74.7
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 9.4e-103 377.9 224 80.8
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.5e-97 359.4 197 85.3
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 3.2e-95 352.8 197 84.8
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 3.4e-92 342.8 237 73.4
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.4e-92 342.8 233 69.1
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 3.1e-90 336.3 216 75.9
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 8.9e-77 291.6 224 68.8
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 5.4e-74 282.3 381 44.9
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 5.0e-72 275.8 344 44.2
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 4.3e-71 272.7 219 63.5
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 3.4e-68 263.1 344 42.2
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.1e-66 258.1 299 46.5
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.2e-65 254.6 308 43.5
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.5e-52 211.1 153 69.9
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 9.3e-50 201.8 115 77.4
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.3e-46 191.4 184 59.8
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 4.6e-41 172.9 371 33.4
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 2.8e-38 163.7 94 85.1
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 6.2e-38 162.5 94 84.0
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-37 161.4 94 84.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 4.0e-37 159.8 131 64.9
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 6.9e-37 159.1 131 64.9
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 3.4e-36 156.8 131 63.4
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.2e-35 154.1 94 79.8
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 2.5e-31 140.6 77 87.0
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 7.4e-31 139.0 97 74.2
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 3.4e-28 130.2 73 80.8
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 2.9e-27 127.1 66 86.4
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 1.2e-25 121.7 403 26.1
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 2.1e-25 120.9 133 52.6
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-24 117.9 94 67.0
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 1.8e-21 107.8 116 51.7
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.4e-21 107.5 63 76.2
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 1.2e-17 95.1 62 69.4
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 2.7e-17 94.0 102 52.0
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 5.7e-15 86.3 243 29.6
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 7.4e-15 85.9 51 72.5
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 2.6e-12 77.4 45 77.8
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 1.1e-10 72.0 41 75.6
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 1.6e-09 68.2 46 65.2
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 2.0e-07 61.2 42 64.3
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 2.0e-07 61.2 42 64.3
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 7.4e-07 59.3 39 69.2
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 9.7e-07 58.9 33 81.8


User provided reference genes

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