Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1788.5 882 100.0
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1265.4 886 73.7
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1265.0 887 73.7
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1263.8 894 72.8
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1261.1 886 73.0
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1255.4 887 73.2
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1251.1 894 72.5
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1248.0 892 72.2
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1241.9 887 71.5
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1237.6 887 71.6
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1236.5 889 71.7
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1236.5 883 72.5
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1233.4 888 72.2
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1231.9 870 72.8
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1231.5 887 71.8
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1229.5 870 72.6
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1226.5 890 72.5
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1226.5 925 69.1
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1224.9 884 71.2
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1224.9 870 72.5
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1223.4 868 72.2
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1218.4 887 70.7
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1213.0 886 71.2
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1210.3 859 72.3
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1207.6 886 70.5
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1206.8 815 75.3
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1199.9 886 70.7
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1193.7 861 72.0
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1178.3 884 69.8
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1177.2 933 65.8
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1155.2 911 67.3
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1154.4 886 67.8
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1154.0 895 68.9
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1153.7 895 68.9
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1152.5 884 68.6
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1150.6 884 68.6
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1144.4 895 68.6
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1137.9 859 68.5
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1132.5 891 67.2
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1131.7 890 66.1
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1131.7 905 66.4
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1131.3 861 68.1
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1129.0 859 67.6
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1127.1 862 68.0
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1125.5 865 67.6
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1121.3 862 67.9
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1117.8 865 67.2
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1116.7 875 66.3
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1114.0 851 68.3
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1112.8 874 66.0
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1111.7 1011 59.4
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1109.7 859 67.8
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1108.6 954 62.7
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1108.6 880 66.1
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1104.4 799 71.2
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 0.0e+00 1093.2 862 66.0
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1091.6 848 66.5
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1089.3 860 66.7
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1087.8 854 65.8
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1087.0 886 65.9
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1086.6 884 66.3
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1077.8 855 65.8
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 0.0e+00 1077.0 806 69.6
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1076.2 879 65.0
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 1.0e-309 1066.6 957 61.5
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 5.6e-308 1060.8 877 64.7
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 4.0e-306 1054.7 858 64.7
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 1.3e-304 1049.7 856 63.6
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 6.4e-304 1047.3 892 63.3
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 3.2e-303 1045.0 869 63.4
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 1.6e-302 1042.7 884 63.5
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 3.0e-301 1038.5 861 63.5
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 2.6e-297 1025.4 873 62.7
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 5.2e-290 1001.1 858 62.0
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 6.9e-290 1000.7 857 62.3
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 8.9e-290 1000.3 859 62.0
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 2.6e-289 998.8 858 62.0
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 4.4e-289 998.0 840 62.9
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 9.3e-287 990.3 858 61.7
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 6.6e-285 984.2 856 61.0
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 2.8e-283 978.8 873 60.5
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 6.4e-280 967.6 857 60.9
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 6.4e-280 967.6 857 60.9
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 1.2e-278 963.4 859 61.1
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 7.9e-278 960.7 855 60.5
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.8e-277 959.5 859 60.8
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.1e-276 956.8 860 60.6
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 9.9e-273 943.7 857 59.7
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 3.5e-270 935.3 783 63.5
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.3e-269 932.6 860 60.0
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 8.7e-269 930.6 851 59.5
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 3.3e-268 928.7 884 57.6
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.9e-253 878.6 859 57.3
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 3.0e-245 852.4 796 57.9
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 2.8e-219 766.1 730 58.9
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 6.3e-219 765.0 797 56.2
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 5.5e-215 751.9 895 50.7
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 7.0e-202 708.4 899 48.4
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.1e-199 701.0 898 46.7
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 7.0e-194 681.8 532 67.9
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.4e-180 636.3 401 79.3
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 2.1e-177 627.1 619 55.7
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 7.6e-172 608.6 371 81.1
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.5e-169 599.7 836 44.7
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 3.9e-160 569.7 416 70.9
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 4.0e-149 533.1 478 61.7
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.2e-140 505.0 413 63.4
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.5e-138 497.3 394 68.3
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 2.3e-128 464.2 512 52.5
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.1e-109 400.6 276 71.7
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 5.0e-91 340.1 380 52.9
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.0e-89 332.8 557 41.7
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.0e-89 332.8 557 41.7
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.1e-85 322.4 175 87.4
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 1.9e-82 311.6 285 56.8
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.1e-81 308.1 378 48.9
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 7.8e-76 289.7 151 91.4
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.0e-71 275.0 866 29.3
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.2e-68 265.8 280 55.4
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 3.6e-65 254.2 136 89.0
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.4e-63 247.7 144 84.7
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.5e-60 237.7 136 83.1
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.3e-51 208.4 117 78.6
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.0e-48 197.6 208 47.6
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 4.6e-44 184.1 195 45.1
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.1e-34 152.9 187 50.8
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 2.1e-28 132.1 270 32.6
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 1.0e-27 129.8 89 75.3
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 7.4e-26 123.6 129 51.2
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.8e-24 119.0 162 44.4
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 1.4e-16 92.8 58 70.7
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 2.4e-16 92.0 129 41.9
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.0e-14 86.7 81 59.3
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 8.5e-14 83.6 210 27.6
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 7.2e-13 80.5 118 41.5
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.4e-13 80.1 55 72.7
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.6e-12 79.3 55 72.7
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.1e-12 79.0 60 63.3
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.4e-11 76.3 57 64.9
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.5e-10 72.8 33 93.9
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 7.7e-07 60.5 37 70.3
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 3.8e-06 58.2 43 60.5
C05p44590 Brassica napus HOM05D005283 ORTHO05D021637 5.0e-06 57.8 37 67.6


User provided reference genes

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