Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 3.7e-115 418.3 227 100.0
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 2.1e-70 269.6 233 66.5
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 1.1e-63 247.3 239 62.8
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.1e-63 247.3 238 60.1
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.1e-63 247.3 238 62.2
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 1.9e-63 246.5 229 62.9
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 1.6e-62 243.4 235 59.1
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 2.2e-62 243.0 237 64.1
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 2.8e-62 242.7 232 61.6
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 2.8e-62 242.7 216 65.3
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 3.7e-62 242.3 233 61.8
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 6.3e-62 241.5 243 59.3
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 1.1e-61 240.7 232 61.6
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 4.1e-61 238.8 218 66.1
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 6.9e-61 238.0 235 58.3
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.2e-60 237.3 228 59.6
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 1.5e-60 236.9 218 66.5
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 1.0e-59 234.2 218 65.6
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 2.9e-59 232.6 229 62.0
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 1.1e-58 230.7 239 60.7
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 1.1e-58 230.7 243 58.8
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 1.1e-58 230.7 238 61.3
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 1.8e-56 223.4 206 63.1
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 1.8e-56 223.4 231 59.3
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 2.3e-56 223.0 238 58.8
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 3.0e-56 222.6 223 62.8
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 3.9e-56 222.2 226 59.7
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 9.7e-55 217.6 222 58.1
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 3.7e-54 215.7 254 55.5
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 4.8e-54 215.3 248 52.8
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 6.3e-54 214.9 220 56.4
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 2.4e-53 213.0 234 61.1
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 3.1e-53 212.6 233 56.7
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 4.1e-53 212.2 227 61.2
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 9.1e-53 211.1 152 70.4
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 9.1e-53 211.1 248 52.0
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 9.1e-53 211.1 248 52.0
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 1.5e-52 210.3 220 56.4
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 3.4e-52 209.1 238 57.6
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 4.5e-52 208.8 234 58.1
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 4.5e-52 208.8 241 55.2
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 7.7e-52 208.0 242 57.9
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 7.7e-52 208.0 250 56.8
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 7.7e-52 208.0 234 54.3
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.2e-51 206.5 230 56.5
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.8e-51 205.7 227 60.4
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 1.9e-50 203.4 160 69.4
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 9.4e-50 201.1 243 53.9
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 2.1e-49 199.9 230 54.3
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 2.3e-48 196.4 217 56.7
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 3.9e-48 195.7 208 57.2
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 8.8e-48 194.5 232 53.0
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 1.1e-47 194.1 262 47.3
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 1.1e-47 194.1 231 51.5
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 1.5e-47 193.7 261 46.4
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 9.7e-47 191.0 266 47.0
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 1.7e-46 190.3 177 61.0
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 1.7e-46 190.3 197 58.9
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 2.2e-46 189.9 177 58.8
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 4.8e-46 188.7 229 52.0
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 8.2e-46 188.0 267 49.4
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 1.8e-45 186.8 253 47.0
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.4e-45 186.4 233 54.5
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 2.4e-45 186.4 220 54.1
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 4.1e-45 185.7 223 52.0
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 5.3e-45 185.3 254 46.9
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 5.3e-45 185.3 254 46.9
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 5.3e-45 185.3 200 56.0
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 7.0e-45 184.9 230 50.0
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 7.0e-45 184.9 266 44.7
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 1.2e-44 184.1 157 65.0
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 4.5e-44 182.2 166 60.8
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 1.3e-43 180.6 231 49.8
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.7e-43 180.3 167 61.7
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 2.2e-43 179.9 152 63.8
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 2.9e-43 179.5 230 49.1
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 3.8e-43 179.1 261 43.7
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 3.8e-43 179.1 211 55.9
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.5e-42 176.4 245 49.4
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 2.5e-42 176.4 176 56.8
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 5.5e-42 175.3 260 45.8
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 5.5e-42 175.3 260 45.8
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 9.4e-42 174.5 263 44.5
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 9.4e-42 174.5 263 44.5
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.2e-41 174.1 231 53.7
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 1.2e-41 174.1 262 44.3
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 3.6e-41 172.6 152 57.9
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 6.1e-41 171.8 247 47.8
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 1.0e-40 171.0 262 42.7
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 4.0e-40 169.1 161 57.1
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 1.1e-39 167.5 216 52.3
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 2.8e-38 162.9 168 55.4
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 5.3e-37 158.7 249 46.2
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 5.3e-37 158.7 139 65.5
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 9.4e-34 147.9 184 52.7
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.8e-32 143.7 176 47.7
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 4.0e-32 142.5 227 40.5
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 1.2e-31 141.0 236 43.6
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 2.6e-31 139.8 227 44.9
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 6.3e-30 135.2 230 43.0
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 1.4e-29 134.0 209 44.5
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 2.0e-28 130.2 205 44.9
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 7.2e-26 121.7 262 33.2
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.6e-25 120.6 109 60.6
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 2.1e-25 120.2 175 49.1
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 1.3e-22 110.9 221 38.0
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 1.6e-17 94.0 54 88.9
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 8.0e-17 91.7 68 67.6
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.0e-16 89.7 51 88.2
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 5.7e-15 85.5 192 38.0
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 4.1e-13 79.3 119 47.1
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 2.5e-10 70.1 118 50.8
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 4.3e-10 69.3 97 45.4
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.1e-09 67.0 50 70.0
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 1.2e-07 61.2 157 33.8
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 1.2e-07 61.2 157 33.8
AT2G03010 Arabidopsis thaliana HOM05D007773 ORTHO05D008084 5.8e-07 58.9 102 46.1
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 7.5e-07 58.5 109 35.8
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 9.8e-07 58.2 110 37.3
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 9.8e-07 58.2 196 33.2
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 2.9e-06 56.6 56 53.6
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 4.9e-06 55.8 90 40.0


User provided reference genes

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