Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 3.9e-182 641.3 327 100.0
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 5.4e-131 471.5 332 69.0
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 5.4e-131 471.5 332 69.0
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 5.4e-131 471.5 327 69.7
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 6.6e-129 464.5 327 67.3
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 6.6e-129 464.5 329 68.1
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 8.6e-129 464.2 329 74.5
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 2.5e-128 462.6 328 69.2
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.6e-127 459.9 328 68.9
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 2.8e-127 459.1 328 68.6
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 2.6e-125 452.6 329 67.8
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 4.4e-125 451.8 327 69.4
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 5.7e-125 451.4 327 68.8
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 7.5e-125 451.1 327 69.4
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 6.3e-124 448.0 327 64.8
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.2e-123 445.7 327 67.6
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 5.4e-123 444.9 327 65.7
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 5.4e-123 444.9 327 64.8
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 7.0e-123 444.5 335 68.7
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 9.2e-123 444.1 327 67.6
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.3e-121 440.3 337 68.0
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 5.0e-121 438.3 331 68.6
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 5.0e-121 438.3 340 65.3
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.5e-120 436.8 328 64.9
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.5e-120 436.0 334 71.3
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 2.5e-120 436.0 334 71.3
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 3.3e-120 435.6 328 64.6
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 7.3e-120 434.5 328 66.5
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.6e-119 433.3 335 70.7
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.1e-119 431.4 327 65.7
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 8.0e-119 431.0 330 65.2
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.0e-118 430.6 349 65.0
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.4e-118 430.3 341 64.2
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 2.3e-118 429.5 331 71.0
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 8.9e-118 427.6 323 64.7
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 2.6e-117 426.0 328 68.6
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 5.8e-117 424.9 329 65.7
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.3e-116 423.7 328 69.8
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 1.3e-116 423.7 334 69.2
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.7e-116 423.3 338 64.2
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 6.4e-116 421.4 328 64.3
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.9e-115 419.9 342 62.0
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.9e-115 419.9 327 64.2
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 4.1e-115 418.7 331 69.2
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.0e-115 417.9 327 64.5
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.6e-114 415.2 340 59.7
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 3.9e-113 412.1 386 56.2
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 5.0e-113 411.8 331 67.1
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.9e-112 409.8 365 58.9
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.9e-112 409.8 330 67.0
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 5.6e-112 408.3 385 56.1
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 5.6e-112 408.3 256 74.6
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 4.7e-111 405.2 331 61.3
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 8.0e-111 404.4 340 60.9
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.3e-110 402.9 259 71.8
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 3.1e-110 402.5 333 62.5
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 6.8e-110 401.4 256 72.3
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 1.2e-109 400.6 338 61.2
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.2e-109 400.6 384 57.3
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.5e-109 400.2 390 55.4
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.6e-109 399.4 256 71.9
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.3e-108 397.1 356 62.1
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 6.4e-108 394.8 335 60.3
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 8.3e-108 394.4 331 60.4
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.4e-107 393.7 380 59.5
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.4e-107 392.9 378 55.6
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 4.1e-107 392.1 328 60.4
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.2e-106 390.6 303 65.3
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.1e-106 389.8 389 53.7
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.3e-105 387.1 343 57.1
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.6e-104 381.7 328 59.8
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 9.5e-104 380.9 339 60.8
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.2e-103 380.6 332 59.9
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 4.7e-103 378.6 390 52.6
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 6.2e-103 378.3 353 60.1
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 1.4e-102 377.1 382 53.9
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 3.1e-102 375.9 254 70.5
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 1.2e-101 374.0 349 57.6
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 1.3e-100 370.5 277 68.6
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.4e-99 366.3 232 71.6
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 3.2e-99 365.9 343 54.5
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 4.1e-99 365.5 262 65.3
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.5e-96 357.1 214 76.2
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 2.5e-96 356.3 207 77.8
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 3.3e-96 355.9 333 53.2
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.6e-95 353.6 347 54.2
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.5e-93 347.1 335 55.5
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 2.0e-93 346.7 225 71.1
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 2.2e-92 343.2 328 54.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 3.8e-92 342.4 328 54.3
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.9e-91 340.1 326 53.4
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.2e-91 339.3 376 49.7
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 3.5e-90 335.9 317 54.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 7.8e-90 334.7 327 52.0
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.7e-89 333.6 335 51.0
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 8.7e-89 331.3 328 53.4
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.1e-88 330.9 293 57.7
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 4.3e-88 328.9 329 52.9
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 5.6e-88 328.6 252 61.5
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.4e-85 319.3 340 54.7
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.4e-83 313.9 327 48.6
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.3e-81 306.6 386 46.4
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.9e-80 303.5 259 54.8
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.6e-79 300.4 256 58.2
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.8e-79 299.7 332 47.6
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.1e-78 297.7 333 45.3
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.1e-78 297.7 333 45.3
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 6.9e-78 295.0 333 45.0
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.5e-77 293.9 327 47.1
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 5.8e-77 292.0 327 47.1
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 9.9e-77 291.2 327 47.7
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 9.9e-77 291.2 244 66.0
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 3.8e-76 289.3 333 44.4
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 3.2e-75 286.2 174 76.4
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 5.4e-75 285.4 336 44.6
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.6e-74 283.9 333 43.8
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.0e-68 264.6 159 73.6
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 3.2e-67 259.6 262 48.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.5e-64 250.8 167 67.1
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.9e-60 236.5 254 50.4
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 4.6e-58 229.2 310 41.9
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.3e-57 226.9 150 71.3
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 8.7e-57 224.9 306 42.5
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.8e-55 219.2 153 66.0
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.5e-44 181.8 113 72.6
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.2e-42 177.9 189 54.5
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.6e-42 176.4 119 70.6
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 1.2e-37 161.4 248 41.5
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 8.8e-33 145.2 100 69.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 9.7e-32 141.7 80 77.5
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.0e-28 131.7 117 57.3
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.4e-25 121.3 122 59.8
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 9.4e-19 98.6 124 51.6
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.6e-18 96.7 56 66.1
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 8.3e-15 85.5 50 74.0
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.1e-14 83.2 44 84.1
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 4.5e-13 79.7 55 72.7
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.3e-12 77.4 48 68.8
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 2.3e-12 77.4 52 65.4
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 2.8e-10 70.5 376 20.5


User provided reference genes

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