Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 1.2e-235 819.7 484 100.0
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 1.7e-64 251.1 358 48.3
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 3.8e-64 250.0 510 38.4
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 3.2e-63 246.9 505 41.2
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 1.5e-60 238.0 290 51.4
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 7.3e-60 235.7 295 49.5
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 8.1e-59 232.3 429 44.3
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 8.1e-59 232.3 520 37.3
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.8e-58 231.1 473 40.8
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 1.2e-57 228.4 296 48.3
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 4.4e-57 226.5 311 48.6
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 7.6e-57 225.7 403 42.7
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 7.6e-57 225.7 313 48.2
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.3e-56 224.9 407 41.8
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 2.2e-56 224.2 323 47.1
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 2.9e-56 223.8 484 40.1
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 3.8e-56 223.4 400 42.8
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.1e-55 221.9 318 47.5
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 9.3e-55 218.8 387 43.4
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 1.6e-54 218.0 403 42.7
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.6e-54 218.0 297 46.1
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.6e-54 218.0 340 45.6
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.0e-53 215.3 399 40.6
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 8.7e-53 212.2 297 47.8
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.5e-52 211.5 504 37.3
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 2.5e-52 210.7 295 47.1
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 2.5e-52 210.7 356 44.9
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 4.3e-52 209.9 314 46.2
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 7.3e-52 209.1 373 40.8
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.6e-51 208.0 481 36.6
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.1e-51 207.6 311 46.3
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.8e-51 206.5 365 41.6
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 6.2e-51 206.1 481 36.8
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 2.4e-50 204.1 540 34.1
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 4.0e-50 203.4 401 39.4
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 4.0e-50 203.4 510 36.1
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 4.0e-50 203.4 303 46.2
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.2e-49 201.8 277 48.7
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 3.4e-49 200.3 291 45.7
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 4.5e-49 199.9 421 40.4
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 7.6e-49 199.1 411 40.1
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.7e-48 198.0 382 39.0
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 2.2e-48 197.6 409 38.6
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 2.2e-48 197.6 413 39.5
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.9e-48 197.2 384 39.3
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 2.9e-48 197.2 421 40.1
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.9e-48 197.2 411 40.4
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 4.9e-48 196.4 541 37.5
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 8.4e-48 195.7 421 40.1
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.1e-47 195.3 475 37.9
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.1e-47 195.3 307 43.6
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 1.9e-47 194.5 411 39.2
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 1.9e-47 194.5 285 43.9
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 1.9e-47 194.5 295 46.4
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 1.9e-47 194.5 376 38.0
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 4.2e-47 193.4 484 35.1
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 5.4e-47 193.0 285 43.9
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 1.2e-46 191.8 414 40.3
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.6e-46 191.4 427 38.2
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 4.6e-46 189.9 311 44.1
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 1.0e-45 188.7 400 36.8
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 1.8e-45 188.0 310 42.6
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 2.3e-45 187.6 286 42.3
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.3e-45 187.6 302 43.7
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 3.9e-45 186.8 290 45.9
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 3.9e-45 186.8 406 38.7
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 6.7e-45 186.0 422 38.2
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 1.9e-44 184.5 487 35.5
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.5e-44 184.1 422 37.4
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 2.5e-44 184.1 325 41.8
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 2.5e-44 184.1 400 39.5
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 3.3e-44 183.7 415 37.6
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 4.3e-44 183.3 293 44.0
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 7.4e-44 182.6 303 43.6
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 9.6e-44 182.2 307 41.7
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 1.3e-43 181.8 375 38.7
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 1.3e-43 181.8 279 45.2
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 2.1e-43 181.0 386 38.6
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 2.1e-43 181.0 386 38.6
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 2.1e-43 181.0 366 39.9
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 2.8e-43 180.6 316 41.1
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 2.8e-43 180.6 294 43.5
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.8e-43 180.6 398 38.2
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 1.1e-42 178.7 300 42.3
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 1.1e-42 178.7 300 42.3
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 1.1e-42 178.7 295 41.7
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 1.1e-42 178.7 278 42.1
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 1.4e-42 178.3 294 41.5
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.8e-42 177.9 303 43.2
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.5e-41 174.9 303 42.6
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 1.5e-41 174.9 323 39.9
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 5.8e-41 172.9 293 42.7
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 7.6e-41 172.6 388 37.1
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 9.9e-41 172.2 317 39.7
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 1.3e-40 171.8 283 42.4
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 1.7e-40 171.4 301 39.9
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.7e-40 171.4 504 33.1
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 4.9e-40 169.9 289 41.2
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 4.9e-40 169.9 401 34.9
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 6.4e-40 169.5 289 41.2
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 6.4e-40 169.5 289 41.2
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 1.4e-39 168.3 285 42.8
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 2.5e-39 167.5 320 40.3
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 3.3e-36 157.1 394 35.5
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 2.8e-35 154.1 315 37.8
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.8e-34 151.4 425 34.1
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 8.4e-32 142.5 288 37.2
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 9.3e-31 139.0 406 34.0
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 1.2e-30 138.7 274 38.3
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.5e-30 137.1 256 39.5
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 3.3e-28 130.6 362 37.6
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 7.4e-28 129.4 261 36.0
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 1.3e-27 128.6 242 40.9
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 5.9e-25 119.8 237 36.3
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 3.8e-24 117.1 282 33.3
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 5.0e-24 116.7 251 38.2
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 5.0e-24 116.7 196 41.8
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.4e-23 115.2 310 31.6
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 3.2e-23 114.0 147 46.3
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 7.2e-23 112.8 249 37.3
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 3.7e-19 100.5 232 31.5
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 4.1e-18 97.1 129 41.9
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.4e-10 72.0 377 26.3
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 1.8e-10 71.6 250 27.6
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 1.0e-08 65.9 414 25.6
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 2.2e-08 64.7 288 25.0
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.6e-06 58.5 174 32.8


User provided reference genes

Program Settings