Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 2590.8 1330 100.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1588.9 1379 61.6
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1585.9 1379 61.6
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1557.3 1367 60.9
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1550.8 1403 60.2
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1549.3 1365 60.1
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1542.7 1365 59.7
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1540.0 1365 59.7
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1536.9 1365 59.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1520.0 1373 59.8
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1512.7 1327 61.9
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1506.9 1368 60.7
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1489.6 1358 60.4
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1481.5 1364 60.3
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1479.2 1358 60.1
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1468.4 1374 58.2
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1468.0 1404 58.8
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1466.4 1427 56.8
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1464.5 1369 57.0
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1458.7 1385 58.6
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1444.5 1355 58.3
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1440.6 1341 58.3
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1430.2 1364 57.7
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1407.5 1372 56.9
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1406.0 1394 56.4
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1403.7 1381 56.3
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1401.7 1383 56.4
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1393.3 1373 56.0
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1392.1 1372 55.2
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1384.4 1380 55.9
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1374.8 1384 55.1
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1372.1 1399 54.2
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1370.9 1412 53.9
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1370.5 1349 56.3
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1370.1 1437 54.0
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1363.6 1210 60.7
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1352.8 1365 56.1
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1351.7 1358 54.9
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1350.9 1379 54.3
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1349.0 1369 55.3
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1348.6 1364 54.8
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1347.0 1358 54.6
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1340.5 1322 57.3
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1340.1 1382 53.7
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1339.7 1365 55.3
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1337.8 1354 56.2
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1335.9 1367 55.7
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1329.3 1354 54.1
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1325.5 1347 54.3
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1325.5 1361 53.6
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1325.5 1412 53.3
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1318.1 1378 53.0
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1314.7 1375 53.0
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1312.7 1416 51.5
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1311.2 1383 53.2
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1305.8 1352 54.0
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1305.4 1348 54.4
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1304.3 1333 54.0
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1304.3 1414 51.8
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1295.8 1367 53.3
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1288.9 1337 54.5
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1281.2 1544 49.7
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1278.1 1351 53.6
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1274.6 1358 53.1
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1272.7 1358 53.1
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1272.7 1489 50.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1271.1 1361 52.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1267.7 1360 53.0
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1263.8 1372 52.1
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1259.6 1358 52.6
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1253.0 1368 52.6
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1213.7 1587 47.7
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1209.9 1375 48.9
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1203.0 1358 51.5
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1201.8 1125 60.2
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1180.2 1353 50.8
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1160.2 1320 51.1
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 6.9e-310 1067.8 1039 56.1
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 4.6e-306 1055.0 1365 45.5
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 6.2e-303 1044.6 1104 53.0
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 3.7e-295 1018.8 991 56.7
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 5.0e-284 981.9 1008 55.1
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.5e-272 943.7 1151 47.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.7e-255 887.1 1048 49.1
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.2e-253 880.9 826 58.0
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 8.3e-247 858.2 1306 41.0
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 6.6e-244 848.6 847 54.8
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 3.5e-237 826.2 737 59.8
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.6e-229 800.8 705 60.9
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 9.3e-206 721.8 827 49.2
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.6e-189 667.9 1352 35.5
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 3.2e-182 643.7 1423 32.9
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.9e-166 591.3 1420 30.6
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 3.8e-159 567.0 522 58.6
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 9.4e-158 562.4 599 53.6
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 8.0e-157 559.3 446 68.2
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 4.0e-148 530.4 444 64.6
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.1e-137 493.8 663 41.2
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 4.5e-136 490.3 538 50.9
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.3e-130 472.2 537 49.5
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 1.7e-127 461.8 399 62.9
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 4.3e-126 457.2 340 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.4e-124 452.2 1031 33.0
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.9e-98 364.8 471 42.5
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.4e-92 345.9 359 56.0
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.9e-87 327.8 264 64.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.5e-86 325.9 561 40.1
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 2.8e-85 321.6 822 34.5
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.7e-72 278.5 474 38.6
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.9e-72 276.9 355 47.3
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.1e-60 238.0 160 75.0
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.1e-60 238.0 419 37.9
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 8.8e-55 220.3 224 55.8
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 8.8e-55 220.3 393 38.4
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.3e-54 218.0 138 77.5
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-51 209.5 148 72.3
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 4.5e-51 208.0 247 43.7
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 5.5e-49 201.1 169 61.5
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 7.2e-49 200.7 202 52.5
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 2.3e-47 195.7 217 50.7
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.6e-46 192.2 364 36.0
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 3.7e-45 188.3 148 66.2
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 5.3e-44 184.5 189 55.6
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 9.1e-44 183.7 260 40.0
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 1.9e-41 176.0 168 56.5
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 5.5e-41 174.5 137 64.2
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.6e-40 172.9 668 26.0
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 6.3e-37 161.0 179 50.3
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 2.0e-30 139.4 1081 22.1
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 1.1e-28 133.7 135 54.1
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.9e-26 125.6 128 53.1
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 5.0e-26 124.8 547 27.1
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.6e-24 119.8 1159 22.7
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 2.1e-24 119.4 96 60.4
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 2.7e-24 119.0 160 45.6
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 1.4e-23 116.7 113 52.2
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.0e-23 115.5 267 35.2
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.0e-22 112.8 78 71.8
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 2.2e-21 109.4 178 40.4
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 4.8e-21 108.2 87 64.4
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 8.3e-21 107.5 106 57.5
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 4.5e-19 101.7 421 25.2
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 2.3e-18 99.4 66 75.8
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 3.8e-18 98.6 572 24.7
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.1e-17 97.1 100 46.0
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.9e-17 96.3 114 47.4
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.0e-15 90.5 121 43.8
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.4e-15 90.1 95 46.3
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.2e-15 88.2 142 45.1
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 8.9e-15 87.4 61 67.2
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.7e-13 82.0 137 38.7
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.6e-11 76.6 166 38.6
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 3.5e-11 75.5 166 38.6
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 1.7e-10 73.2 108 40.7
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 3.9e-10 72.0 100 43.0
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 1.5e-09 70.1 56 62.5
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.5e-09 70.1 64 59.4
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 4.3e-09 68.6 51 62.7
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 5.6e-09 68.2 95 40.0
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 7.3e-09 67.8 78 47.4
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 1.2e-08 67.0 60 60.0
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 3.6e-08 65.5 66 54.5
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 5.2e-07 61.6 109 42.2
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.2e-06 60.5 109 41.3


User provided reference genes

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