Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.9e-249 864.4 445 100.0
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.8e-193 679.5 452 75.4
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 3.7e-191 671.8 455 74.1
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 4.1e-190 668.3 452 73.5
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 2.0e-189 666.0 449 76.2
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 2.6e-189 665.6 455 73.8
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.1e-187 660.2 449 75.3
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.2e-187 658.7 449 75.1
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 4.7e-186 654.8 451 74.1
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 4.7e-186 654.8 466 71.0
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 6.7e-185 651.0 451 72.9
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 8.8e-185 650.6 453 74.0
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.5e-184 649.8 451 73.4
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 2.0e-184 649.4 455 73.0
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 7.4e-184 647.5 451 72.5
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.8e-183 644.8 458 70.7
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.8e-183 644.8 452 72.3
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.1e-182 643.7 455 71.6
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.1e-182 643.7 455 71.6
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.2e-181 640.2 450 73.6
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 2.0e-181 639.4 481 69.9
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 4.5e-181 638.3 458 69.9
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 5.9e-181 637.9 481 69.9
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.7e-180 636.3 451 71.8
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.7e-180 636.3 450 72.2
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-179 633.3 459 69.9
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.9e-179 632.9 450 72.2
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 9.4e-179 630.6 460 69.8
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 9.4e-179 630.6 451 70.5
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.2e-178 630.2 450 71.6
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 2.1e-178 629.4 450 71.6
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 2.7e-178 629.0 450 70.4
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.7e-178 629.0 455 69.0
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 3.6e-178 628.6 450 71.8
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 6.1e-178 627.9 449 68.4
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 8.0e-178 627.5 452 68.1
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.4e-177 626.7 455 67.3
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.4e-177 626.7 460 69.8
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.8e-177 626.3 457 69.6
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.8e-177 626.3 450 71.1
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.8e-177 626.3 458 69.0
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.0e-177 625.5 460 68.9
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 3.0e-177 625.5 451 69.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.0e-177 625.5 453 67.5
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 3.0e-177 625.5 448 71.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 3.0e-177 625.5 449 70.6
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.9e-177 625.2 449 70.4
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 5.2e-177 624.8 459 68.8
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 5.2e-177 624.8 450 70.2
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 5.2e-177 624.8 450 70.9
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 6.7e-177 624.4 453 69.8
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 8.8e-177 624.0 454 68.1
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.5e-176 623.2 454 68.1
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.5e-176 623.2 454 68.1
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.0e-176 622.9 454 68.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 4.4e-176 621.7 460 69.3
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 4.4e-176 621.7 455 71.4
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 7.4e-176 620.9 461 69.4
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 7.4e-176 620.9 395 79.5
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 7.4e-176 620.9 451 69.6
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.3e-175 620.2 451 70.3
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.3e-175 620.2 454 67.2
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.7e-175 619.8 454 67.4
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.7e-175 619.8 454 69.4
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 3.7e-175 618.6 450 70.4
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 4.8e-175 618.2 454 67.6
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 8.2e-175 617.5 454 68.9
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.4e-174 615.9 448 70.8
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 2.4e-174 615.9 448 69.0
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 9.1e-174 614.0 454 66.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 9.1e-174 614.0 456 68.0
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 4.5e-173 611.7 450 70.0
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.7e-172 609.8 477 65.0
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.2e-172 609.4 454 67.2
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 2.2e-172 609.4 452 69.5
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 5.0e-172 608.2 466 67.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.1e-171 607.1 451 69.6
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.1e-171 607.1 451 69.6
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.5e-171 606.7 450 70.2
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 2.5e-171 605.9 397 77.6
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 7.2e-171 604.4 449 69.3
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 9.4e-171 604.0 454 66.7
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 9.4e-171 604.0 454 66.7
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.2e-170 603.6 491 64.6
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.7e-170 601.7 453 68.7
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 3.0e-169 599.0 481 63.4
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 4.0e-169 598.6 478 64.9
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.5e-168 596.7 421 72.2
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.4e-168 595.1 450 68.2
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 9.7e-168 594.0 454 66.7
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.3e-167 593.6 456 68.2
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.3e-167 593.6 455 67.3
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 8.3e-167 590.9 450 68.7
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-166 590.5 449 67.9
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.1e-166 589.0 444 67.3
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 5.3e-166 588.2 452 64.8
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.6e-165 586.6 416 72.6
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 4.5e-165 585.1 441 66.7
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 7.7e-165 584.3 471 65.4
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 2.2e-164 582.8 475 63.8
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.5e-164 581.3 548 58.0
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.1e-163 580.5 450 66.4
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.0e-161 572.0 439 65.6
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 5.7e-160 568.2 463 61.8
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.2e-157 560.5 391 73.1
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.7e-156 556.6 461 62.9
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.6e-154 550.1 407 68.3
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 7.8e-149 531.2 390 69.2
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.9e-148 528.9 477 59.7
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.3e-147 524.6 460 58.3
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.4e-142 509.6 405 65.2
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 7.0e-142 508.1 443 60.0
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.2e-137 491.9 384 66.1
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 9.8e-136 487.6 452 55.3
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.9e-135 485.3 340 74.4
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 5.4e-134 481.9 446 57.0
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.7e-132 476.9 453 55.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 9.5e-131 471.1 450 53.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 6.4e-127 458.4 441 54.2
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.1e-126 457.6 452 56.9
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.3e-124 450.7 447 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 5.6e-123 445.3 427 53.2
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 2.6e-120 436.4 452 50.0
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 2.6e-120 436.4 395 57.2
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 4.4e-120 435.6 279 77.8
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 6.4e-119 431.8 316 72.8
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.6e-117 427.2 452 48.7
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 7.8e-117 424.9 452 48.5
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 2.1e-114 416.8 448 49.3
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.5e-104 382.5 440 47.3
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-99 367.9 385 51.9
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.5e-99 367.5 306 62.7
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.3e-92 344.4 260 69.6
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 9.6e-91 338.2 252 67.5
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.5e-78 295.8 451 39.5
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 1.6e-77 294.3 303 55.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.8e-73 280.8 445 41.8
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 8.5e-71 271.9 198 67.2
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.8e-60 237.7 174 66.1
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.5e-54 216.1 135 75.6
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.7e-53 213.8 158 70.9
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.4e-49 199.5 154 66.2
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.7e-47 194.5 192 51.6
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 5.0e-39 166.4 121 71.9
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.6e-37 161.4 140 62.1
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.9e-34 150.6 133 57.9
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.9e-34 150.6 94 76.6
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.9e-32 142.9 116 63.8
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.1e-25 122.1 118 53.4
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.0e-23 114.0 99 56.6
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 3.0e-23 114.0 74 73.0
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 5.8e-19 99.8 72 68.1
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.4e-17 94.4 60 78.3
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 7.3e-14 82.8 63 65.1
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 1.4e-12 78.6 75 54.7
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 3.4e-11 73.9 44 77.3
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.4e-09 67.8 49 63.3


User provided reference genes

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