Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 0.0e+00 2739.9 1368 100.0
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 4.6e-309 1065.1 1376 45.2
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 1.7e-308 1063.1 1405 44.3
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 1.9e-302 1043.1 1394 43.4
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 1.6e-298 1030.0 1404 43.8
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 6.2e-298 1028.1 1391 44.4
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 8.1e-298 1027.7 1385 44.2
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 3.2e-294 1015.8 1398 43.6
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 8.1e-290 1001.1 1422 42.5
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 1.2e-288 997.3 1394 43.5
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 1.6e-285 986.9 1463 41.6
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 5.6e-283 978.4 1397 42.9
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 9.3e-278 961.1 1406 42.7
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.5e-271 938.3 1403 42.0
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 4.6e-269 932.2 1376 42.2
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 2.3e-268 929.9 1376 42.7
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 5.7e-267 925.2 1425 41.0
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.8e-266 922.9 1431 41.2
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 1.1e-265 921.0 1403 41.5
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 3.8e-263 912.5 1246 44.8
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 2.1e-261 906.7 1387 42.3
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 2.6e-259 899.8 1401 41.2
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 2.5e-254 883.2 1439 40.5
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 3.7e-250 869.4 1406 38.6
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 5.3e-249 865.5 1398 40.8
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.2e-242 843.6 1343 39.9
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 3.7e-242 842.8 1401 37.6
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 6.3e-242 842.0 1383 38.1
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 8.2e-242 841.6 1405 38.5
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 1.2e-240 837.8 1396 39.9
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.4e-233 814.3 1375 40.3
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 1.8e-233 813.9 1397 36.9
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 4.1e-233 812.8 1353 38.0
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 1.2e-232 811.2 1376 40.2
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 2.7e-232 810.1 1402 37.4
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 2.7e-232 810.1 1426 39.6
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 1.4e-228 797.7 1438 37.0
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 1.5e-227 794.3 1407 38.7
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 6.3e-226 788.9 1395 37.1
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 1.7e-223 780.8 1427 36.7
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 1.5e-222 777.7 1399 36.6
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 5.6e-222 775.8 1401 37.0
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 7.3e-222 775.4 1408 37.8
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.0e-220 771.5 1374 38.9
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 1.2e-219 768.1 1392 37.6
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 2.2e-218 763.8 1402 37.7
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 3.1e-212 743.4 1384 36.1
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 2.9e-210 736.9 1420 36.4
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 4.9e-210 736.1 1386 35.5
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 1.7e-207 727.6 1399 35.4
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 2.3e-207 727.2 1380 34.7
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 1.7e-202 711.1 1238 39.3
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 6.4e-202 709.1 1357 35.7
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 1.4e-201 708.0 1388 34.7
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 2.5e-198 697.2 1410 34.3
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 6.2e-197 692.6 1194 38.1
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 1.8e-196 691.0 1366 35.2
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 1.2e-195 688.3 1370 35.5
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 3.0e-191 673.7 1390 34.5
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 3.9e-191 673.3 1190 37.4
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 1.1e-188 665.2 1378 35.4
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 1.5e-187 661.4 1380 34.9
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 7.6e-187 659.1 1397 33.9
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 1.4e-185 654.8 1374 32.9
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 1.9e-185 654.4 1369 34.6
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 7.1e-185 652.5 1367 34.5
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 2.1e-184 651.0 1380 34.7
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 6.0e-184 649.4 1371 34.8
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 1.0e-183 648.7 1373 34.5
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 1.9e-182 644.4 1371 35.1
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 6.4e-178 629.4 1153 36.1
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 1.4e-177 628.2 1367 34.1
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.4e-177 628.2 1304 34.7
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 3.9e-175 620.2 1403 33.0
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 8.7e-167 592.4 1217 36.1
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 2.1e-165 587.8 1518 30.6
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 5.5e-161 573.2 1046 36.4
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 3.1e-156 557.4 1016 37.6
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 3.6e-152 543.9 1505 30.8
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 3.1e-148 530.8 837 40.6
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 4.2e-145 520.4 979 37.7
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 2.5e-137 494.6 1395 29.9
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 6.7e-135 486.5 1416 29.9
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 1.2e-126 459.1 1392 28.5
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 1.8e-116 425.2 956 32.6
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 5.0e-106 390.6 829 34.7
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 6.1e-104 383.6 404 48.3
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 4.3e-97 360.9 437 44.6
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 4.0e-95 354.4 408 47.1
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 8.9e-95 353.2 464 43.8
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 7.1e-92 343.6 364 52.7
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 6.6e-82 310.5 644 35.4
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 5.6e-81 307.4 375 48.0
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 6.8e-79 300.4 376 45.2
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.0e-74 285.0 364 47.0
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.1e-73 283.1 753 32.8
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.4e-71 276.2 278 53.2
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 1.7e-66 259.2 396 42.4
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 5.6e-65 254.2 396 39.9
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 3.6e-64 251.5 462 36.4
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.9e-63 247.3 262 51.1
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 6.7e-58 230.7 270 48.9
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 4.5e-54 218.0 1325 22.3
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.7e-50 204.1 214 51.9
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 2.1e-48 199.1 730 25.6
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.8e-45 188.3 646 25.9
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 1.4e-44 186.4 622 25.4
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 1.0e-42 180.3 331 35.3
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 7.4e-41 174.1 280 39.3
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 1.4e-36 159.8 404 34.2
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 4.2e-36 158.3 149 57.7
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 7.9e-35 154.1 606 26.9
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.5e-33 149.8 201 43.8
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 1.2e-30 140.2 680 24.9
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 2.2e-24 119.4 211 35.5
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 4.8e-24 118.2 169 42.0
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 3.1e-23 115.5 208 33.7
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 7.0e-23 114.4 182 37.9
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 7.2e-20 104.4 276 29.3
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.7e-13 83.2 301 26.6
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 2.9e-13 82.4 266 31.6
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 1.1e-12 80.5 58 60.3
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 3.2e-12 79.0 209 27.3
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 2.6e-09 69.3 52 57.7
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 5.7e-09 68.2 545 22.0
MBI16_g32432_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 4.1e-07 62.0 78 41.0
Solyc07g021115.1 Solanum lycopersicum HOM05D006182 ORTHO05D007236 7.0e-07 61.2 78 39.7


User provided reference genes

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