Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 3.4e-95 351.7 181 100.0
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 1.5e-42 176.8 197 57.9
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 3.5e-39 165.6 203 54.7
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 2.5e-37 159.5 203 53.2
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.6e-36 156.8 209 55.5
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 2.1e-36 156.4 208 55.3
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 6.1e-36 154.8 203 55.2
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 4.0e-35 152.1 202 53.5
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 4.0e-35 152.1 208 50.5
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 2.0e-34 149.8 209 51.2
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 5.8e-34 148.3 198 52.5
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 5.8e-34 148.3 220 51.4
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.7e-33 146.7 206 50.5
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 1.7e-33 146.7 215 49.8
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 3.7e-33 145.6 196 52.6
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 6.4e-33 144.8 219 48.9
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 8.3e-33 144.4 202 52.5
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.3e-33 144.4 199 50.8
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 3.2e-32 142.5 203 50.2
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.1e-32 142.1 199 51.3
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 7.0e-32 141.4 199 51.3
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 4.6e-31 138.7 197 51.3
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 4.6e-31 138.7 196 53.1
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.3e-30 137.1 212 50.0
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.6e-30 134.4 198 48.5
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.9e-29 133.3 198 48.5
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.5e-29 132.9 198 48.0
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 9.5e-29 131.0 200 49.5
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 4.7e-28 128.6 200 50.0
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 2.0e-26 123.2 199 46.7
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.4e-26 122.1 201 48.8
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 5.8e-26 121.7 217 45.6
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 9.8e-26 120.9 201 46.8
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.9e-25 118.6 197 47.7
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 4.9e-25 118.6 204 46.6
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 4.9e-25 118.6 204 46.6
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.1e-24 117.5 192 46.4
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 1.4e-24 117.1 200 48.0
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 1.9e-24 116.7 207 44.4
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 9.2e-24 114.4 192 45.3
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 2.7e-23 112.8 199 47.7
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 6.0e-23 111.7 208 42.3
Eucgr.B01216 Eucalyptus grandis HOM05D001921 ORTHO05D001784 1.3e-22 110.5 141 52.5
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.0e-22 109.4 197 46.2
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 5.1e-22 108.6 210 43.3
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 6.6e-22 108.2 194 46.4
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 6.6e-22 108.2 194 46.4
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 6.6e-22 108.2 194 46.4
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 8.6e-22 107.8 197 45.7
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 8.6e-22 107.8 219 40.2
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 1.1e-21 107.5 212 41.0
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 1.5e-21 107.1 209 41.1
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.9e-21 106.7 212 41.0
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 2.5e-21 106.3 213 40.4
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 7.3e-21 104.8 196 44.9
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 9.5e-21 104.4 189 43.4
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.2e-20 104.0 196 46.4
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.6e-20 103.6 213 44.1
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.8e-20 102.8 197 45.7
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 3.6e-20 102.4 193 45.6
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 3.6e-20 102.4 189 43.4
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.7e-20 102.1 196 43.9
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 6.2e-20 101.7 186 43.0
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 2.3e-19 99.8 191 45.0
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.3e-19 99.8 195 45.6
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 3.1e-19 99.4 193 45.1
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 6.8e-19 98.2 197 42.1
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 6.8e-19 98.2 198 42.4
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 5.8e-18 95.1 213 40.8
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 9.9e-18 94.4 186 45.2
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 2.2e-17 93.2 196 40.8
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.7e-17 92.4 203 44.8
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.9e-17 92.0 191 41.9
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 4.9e-17 92.0 209 38.8
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 4.9e-17 92.0 223 39.9
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 1.4e-16 90.5 196 39.8
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 2.4e-16 89.7 216 39.4
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.2e-16 89.4 190 42.6
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 7.1e-16 88.2 232 37.5
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 7.1e-16 88.2 207 35.7
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 9.2e-16 87.8 211 38.4
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.2e-15 87.4 193 38.9
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.6e-15 87.0 204 42.2
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 4.6e-15 85.5 209 38.8
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 6.0e-15 85.1 218 38.1
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 6.0e-15 85.1 214 40.2
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 6.0e-15 85.1 188 41.5
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 6.0e-15 85.1 186 41.4
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 6.0e-15 85.1 191 38.2
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.3e-14 83.2 65 66.2
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 3.0e-14 82.8 205 40.5
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 3.9e-14 82.4 183 39.9
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 5.1e-14 82.0 230 39.1
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 6.6e-14 81.6 189 41.3
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 8.6e-14 81.3 196 39.3
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 8.6e-14 81.3 204 36.3
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 1.9e-13 80.1 223 38.1
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.5e-13 79.7 224 37.9
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 5.6e-13 78.6 65 64.6
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 1.2e-12 77.4 192 35.4
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 2.8e-12 76.3 191 37.2
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 2.8e-12 76.3 190 39.5
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 2.8e-12 76.3 185 38.9
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 4.7e-12 75.5 178 41.0
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 8.1e-12 74.7 187 35.3
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 8.1e-12 74.7 187 35.3
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.1e-11 74.3 188 35.6
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 1.1e-11 74.3 91 53.8
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 1.4e-11 73.9 204 34.3
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 1.4e-11 73.9 185 37.3
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 1.8e-11 73.6 187 35.8
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 1.8e-11 73.6 189 38.6
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 1.8e-11 73.6 193 37.8
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 2.4e-11 73.2 187 35.3
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 2.4e-11 73.2 187 35.3
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 3.1e-11 72.8 187 35.3
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 5.2e-11 72.0 193 35.8
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 2.6e-10 69.7 192 35.4
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 2.6e-10 69.7 192 34.4
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 3.4e-10 69.3 187 33.2
Migut.N00134 Erythranthe guttata HOM05D001921 ORTHO05D001784 4.4e-10 68.9 187 39.0
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 5.8e-10 68.6 198 32.8
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 5.8e-10 68.6 124 44.4
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 5.8e-10 68.6 187 34.2
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 7.6e-10 68.2 178 35.4
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 2.2e-09 66.6 191 35.1
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 2.2e-09 66.6 181 39.2
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 3.8e-09 65.9 183 33.3
Phvul.003G175500 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 3.8e-09 65.9 198 36.9
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 8.4e-09 64.7 195 33.8
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 8.4e-09 64.7 196 34.7
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 8.4e-09 64.7 196 34.2
Psat4g034000 Pisum sativum HOM05D001921 ORTHO05D001784 1.1e-08 64.3 207 32.4
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.9e-08 63.5 196 33.7
Hma1.2p1_0228F.1_g096620 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.9e-08 63.5 100 45.0
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 3.2e-08 62.8 195 34.9
Oeu030377.1 Olea europaea HOM05D001921 ORTHO05D001784 5.4e-08 62.0 189 32.8
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 5.4e-08 62.0 198 33.8
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 7.1e-08 61.6 194 35.6
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 9.3e-08 61.2 199 34.2
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 9.3e-08 61.2 202 34.7
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 1.6e-07 60.5 80 50.0
SEGI_33680 Sequoiadendron giganteum HOM05D001921 ORTHO05D001784 2.1e-07 60.1 206 31.6
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 3.5e-07 59.3 187 33.7
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 3.5e-07 59.3 189 35.4
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.6e-07 58.9 202 34.7
PGR044G0696 Punica granatum HOM05D001921 ORTHO05D001784 4.6e-07 58.9 55 60.0
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.6e-07 58.9 205 32.7
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 7.8e-07 58.2 209 31.1
Glyma.17G104300 Glycine max HOM05D001921 ORTHO05D001784 7.8e-07 58.2 194 32.5
Dinv38346 Davidia involucrata HOM05D000556 ORTHO05D000404 1.0e-06 57.8 144 39.6
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 1.0e-06 57.8 197 31.0
MD15G1158100 Malus domestica HOM05D001921 ORTHO05D001784 1.0e-06 57.8 220 31.8
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 1.0e-06 57.8 194 33.5
RcHm_v2.0_Chr6g0297171 Rosa chinensis HOM05D014836 ORTHO05D001784 1.0e-06 57.8 201 31.8
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.3e-06 57.4 106 43.4
Lj4g0015946 Lotus japonicus HOM05D001921 ORTHO05D001784 1.3e-06 57.4 210 33.8
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 1.7e-06 57.0 207 31.4
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.7e-06 57.0 195 34.9
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 1.7e-06 57.0 193 33.2
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.7e-06 57.0 106 43.4
MD02G1012300 Malus domestica HOM05D001921 ORTHO05D001784 2.3e-06 56.6 225 32.9
FAN23G0500 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.0e-06 56.2 214 31.3
FvH4_1g01550 Fragaria vesca HOM05D001921 ORTHO05D001784 3.9e-06 55.8 216 31.0
FAN19G1379 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.9e-06 55.8 216 31.0
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 5.1e-06 55.5 192 34.4
QL02p091546 Quercus lobata HOM05D001921 ORTHO05D001784 5.1e-06 55.5 214 30.4
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 6.6e-06 55.1 188 34.6
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 6.6e-06 55.1 198 33.3
ClCG11G003650 Citrullus lanatus HOM05D001921 ORTHO05D001784 8.7e-06 54.7 221 34.4
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 8.7e-06 54.7 198 31.8
FAN26G0252 Fragaria x ananassa HOM05D001921 ORTHO05D001784 8.7e-06 54.7 219 32.0
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 8.7e-06 54.7 195 31.8


User provided reference genes

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