Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1160 Punica granatum HOM05D007547 ORTHO05D009590 3.5e-36 154.5 80 100.0
Nitab4.5_0003384g0040 Nicotiana tabacum HOM05D007547 ORTHO05D009590 2.4e-24 115.2 79 70.9
Peaxi162Scf00479g00092 Petunia axillaris HOM05D007547 ORTHO05D009590 9.1e-24 113.2 80 67.5
PGSC0003DMG400018766 Solanum tuberosum HOM05D007547 ORTHO05D009590 2.6e-23 111.7 79 69.6
Ah.11g039500 Amaranthus hybridus HOM05D007547 ORTHO05D009590 3.4e-23 111.3 81 70.4
Solyc03g046380.1 Solanum lycopersicum HOM05D007547 ORTHO05D009590 1.3e-22 109.4 79 68.4
Sopen03g010530 Solanum pennellii HOM05D007547 ORTHO05D009590 8.5e-22 106.7 79 67.1
Sc15g0005120 Simmondsia chinensis HOM05D007547 ORTHO05D009590 5.5e-21 104.0 82 68.3
MELO3C026033.2 Cucumis melo HOM05D007547 ORTHO05D009590 9.4e-21 103.2 80 71.2
EL10Ac1g02249 Beta vulgaris HOM05D007547 ORTHO05D009590 2.7e-20 101.7 83 65.1
ClCG04G006620 Citrullus lanatus HOM05D007547 ORTHO05D009590 2.7e-20 101.7 80 70.0
Phvul.005G044200 Phaseolus vulgaris HOM05D007547 ORTHO05D009590 2.7e-20 101.7 80 70.0
Sed0025991 Sechium edule HOM05D007547 ORTHO05D009590 3.6e-20 101.3 80 70.0
AT2G21820 Arabidopsis thaliana HOM05D007547 ORTHO05D009590 4.7e-20 100.9 80 67.5
Glyma.08G160800 Glycine max HOM05D007547 ORTHO05D009590 7.9e-20 100.1 80 70.0
Ca_03316_v3 Cicer arietinum L. HOM05D007547 ORTHO05D009590 1.0e-19 99.8 80 68.8
Lj3g0009805 Lotus japonicus HOM05D007547 ORTHO05D009590 1.4e-19 99.4 80 68.8
Psat1g131000 Pisum sativum HOM05D007547 ORTHO05D009590 1.4e-19 99.4 80 67.5
Nn1g09847 Nelumbo nucifera HOM05D007547 ORTHO05D009590 1.8e-19 99.0 79 67.1
Nitab4.5_0001982g0020 Nicotiana tabacum HOM05D007547 ORTHO05D009590 1.8e-19 99.0 81 67.9
TPR.G3626 Trifolium pratense HOM05D007547 ORTHO05D009590 1.8e-19 99.0 80 66.2
CAN.G497.31 Capsicum annuum HOM05D007547 ORTHO05D009590 2.3e-19 98.6 81 66.7
MD05G1241500 Malus domestica HOM05D007547 ORTHO05D009590 2.3e-19 98.6 80 67.5
Nitab4.5_0009717g0010 Nicotiana tabacum HOM05D007547 ORTHO05D009590 2.3e-19 98.6 81 69.1
AL4G11130 Arabidopsis lyrata HOM05D007547 ORTHO05D009590 3.0e-19 98.2 80 66.2
CARHR072880 Cardamine hirsuta HOM05D007547 ORTHO05D009590 3.0e-19 98.2 80 66.2
Thhalv10019600m.g Eutrema salsugineum HOM05D007547 ORTHO05D009590 3.9e-19 97.8 80 66.2
Atru.chr1.6 Acer truncatum HOM05D007547 ORTHO05D009590 5.1e-19 97.4 81 64.2
Carub.0004s0086 Capsella rubella HOM05D007547 ORTHO05D009590 5.1e-19 97.4 80 65.0
Medtr2g062800 Medicago truncatula HOM05D007547 ORTHO05D009590 5.1e-19 97.4 79 67.1
Sp5g34290 Schrenkiella parvula HOM05D007547 ORTHO05D009590 5.1e-19 97.4 79 65.8
Aa31LG4G1780 Aethionema arabicum HOM05D007547 ORTHO05D009590 1.5e-18 95.9 80 63.8
AUR62035430 Chenopodium quinoa HOM05D007547 ORTHO05D009590 2.6e-18 95.1 83 63.9
AUR62035713 Chenopodium quinoa HOM05D007547 ORTHO05D009590 2.6e-18 95.1 83 63.9
CANSAT56G0291 Cannabis sativa HOM05D007547 ORTHO05D009590 3.3e-18 94.7 78 64.1
Lalb_Chr25g0284091 Lupinus albus HOM05D007547 ORTHO05D009590 3.3e-18 94.7 80 65.0
DCAR_013700 Daucus carota HOM05D007547 ORTHO05D009590 4.4e-18 94.4 80 63.8
CsaV3_4G026690 Cucumis sativus L. HOM05D007547 ORTHO05D009590 5.7e-18 94.0 75 68.0
A07p27220 Brassica napus HOM05D007547 ORTHO05D009590 7.4e-18 93.6 80 63.8
BraA07t30366Z Brassica rapa HOM05D007547 ORTHO05D009590 7.4e-18 93.6 80 63.8
Migut.M01490 Erythranthe guttata HOM05D007547 ORTHO05D009590 7.4e-18 93.6 80 62.5
BcaC08g47491 Brassica carinata HOM05D007547 ORTHO05D009590 9.7e-18 93.2 80 63.8
C06p53150 Brassica napus HOM05D007547 ORTHO05D009590 9.7e-18 93.2 80 63.8
BolC6t40331H Brassica oleracea HOM05D007547 ORTHO05D009590 9.7e-18 93.2 80 63.8
BraA07t31944Z Brassica rapa HOM05D007547 ORTHO05D009590 9.7e-18 93.2 80 63.8
TAR624G0069 Trochodendron aralioides HOM05D007547 ORTHO05D009590 9.7e-18 93.2 78 64.1
FAN16G2958 Fragaria x ananassa HOM05D007547 ORTHO05D009590 1.3e-17 92.8 80 63.8
THA.LOC104808152 Tarenaya hassleriana HOM05D007547 ORTHO05D009590 1.3e-17 92.8 80 63.8
Ciclev10007105m.g Citrus clementina HOM05D007547 ORTHO05D009590 2.8e-17 91.7 90 60.0
Manes.11G079000 Manihot esculenta HOM05D007547 ORTHO05D009590 2.8e-17 91.7 79 63.3
QL04p096330 Quercus lobata HOM05D007547 ORTHO05D009590 2.8e-17 91.7 78 62.8
RcHm_v2.0_Chr5g0022881 Rosa chinensis HOM05D007547 ORTHO05D009590 2.8e-17 91.7 79 63.3
BcaC08g45367 Brassica carinata HOM05D007547 ORTHO05D009590 3.7e-17 91.3 80 62.5
BolC6t38159H Brassica oleracea HOM05D007547 ORTHO05D009590 3.7e-17 91.3 80 62.5
Gohir.D05G303200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.7e-17 91.3 81 60.5
Gorai.009G322400 Gossypium raimondii HOM05D007547 ORTHO05D009590 3.7e-17 91.3 81 60.5
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 6.3e-17 90.5 78 62.8
SalBow8G1259 Salvia bowleyana HOM05D007547 ORTHO05D009590 6.3e-17 90.5 84 60.7
Aqoxy1G00763 Aquilegia oxysepala HOM05D007547 ORTHO05D009590 8.2e-17 90.1 80 60.0
FAN11G3189 Fragaria x ananassa HOM05D007547 ORTHO05D009590 8.2e-17 90.1 78 62.8
QL04p096133 Quercus lobata HOM05D007547 ORTHO05D009590 8.2e-17 90.1 78 61.5
QL04p096363 Quercus lobata HOM05D007547 ORTHO05D009590 8.2e-17 90.1 78 61.5
CSS0011642 Camellia sinensis var. sinensis HOM05D007547 ORTHO05D009590 1.4e-16 89.4 80 61.2
Gohir.A02G145400 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.4e-16 89.4 81 59.3
Potri.010G176200 Populus trichocarpa HOM05D007547 ORTHO05D009590 1.4e-16 89.4 79 62.0
Cpa.g.sc118.6 Carica papaya HOM05D007547 ORTHO05D009590 2.4e-16 88.6 80 60.0
Gohir.A06G138100 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.1e-16 88.2 81 58.0
Gohir.A07G180700 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.1e-16 88.2 81 58.0
Gohir.D03G067200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.1e-16 88.2 81 58.0
HPP92_021471 Vanilla planifolia HOM05D007547 ORTHO05D009590 3.1e-16 88.2 81 59.3
Gorai.008G081200 Gossypium raimondii HOM05D007547 ORTHO05D009590 4.1e-16 87.8 81 59.3
TWI59G1298 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 4.1e-16 87.8 80 61.2
Zm00001eb055260 Zea mays HOM05D007547 ORTHO05D009590 7.0e-16 87.0 97 58.8
Eucgr.F04485 Eucalyptus grandis HOM05D007547 ORTHO05D009590 1.2e-15 86.3 90 56.7
Haze_18453 Corylus avellana HOM05D007547 ORTHO05D009147 1.6e-15 85.9 75 57.3
Gohir.A05G237600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.6e-15 85.9 81 56.8
Gohir.D03G007300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.6e-15 85.9 81 56.8
Gohir.D11G227600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.6e-15 85.9 81 56.8
unitig_26.g10053 Utricularia gibba HOM05D007547 ORTHO05D009590 1.6e-15 85.9 79 59.5
Gohir.A11G192300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.6e-15 85.1 81 56.8
Os08g0385000 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 5.9e-15 84.0 90 58.9
CDE06G1569 Ceratophyllum demersum HOM05D000146 ORTHO05D000178 1.3e-14 82.8 78 59.0
COL.COLO4_25679 Corchorus olitorius HOM05D007547 ORTHO05D009590 3.8e-14 81.3 80 50.0
PSO541G4573 Papaver somniferum HOM05D007547 ORTHO05D009590 3.8e-14 81.3 88 55.7
Thecc.10G021200 Theobroma cacao HOM05D007547 ORTHO05D009590 5.0e-14 80.9 82 52.4
Lalb_Chr25g0284071 Lupinus albus HOM05D007547 ORTHO05D009590 1.9e-13 79.0 78 60.3
GSVIVG01036687001 Vitis vinifera HOM05D007547 ORTHO05D009590 1.9e-13 79.0 62 64.5
BcaB02g07207 Brassica carinata HOM05D007547 ORTHO05D009590 1.6e-12 75.9 80 57.5
Gohir.A05G304300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.1e-12 75.5 73 56.2
Peaxi162Scf00020g01922 Petunia axillaris HOM05D007547 ORTHO05D009590 2.1e-12 75.5 64 64.1
C06p29990 Brassica napus HOM05D007547 ORTHO05D009590 2.7e-12 75.1 67 59.7
CDE02G1937 Ceratophyllum demersum HOM05D007547 ORTHO05D009590 5.2e-11 70.9 78 53.8
ECA234G4113 Erigeron canadensis HOM05D007547 ORTHO05D009590 8.8e-11 70.1 89 48.3
TWI38G1141 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 2.0e-10 68.9 83 50.6
TWI38G2170 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 2.0e-10 68.9 83 50.6
Lsat_1_v5_gn_5_102841 Lactuca sativa HOM05D007547 ORTHO05D009590 2.6e-10 68.6 89 47.2
Duzib114G0968 Durio zibethinus HOM05D000021 ORTHO05D000010 2.9e-06 55.1 51 52.9
Mapoly0106s0030 Marchantia polymorpha HOM05D007547 ORTHO05D009590 2.9e-06 55.1 85 45.9
Rhsim04G0026600 Rhododendron simsii HOM05D007547 ORTHO05D009590 8.5e-06 53.5 81 43.2


User provided reference genes

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