Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 0.0e+00 1426.4 719 100.0
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 1.6e-305 1052.4 705 74.2
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 8.9e-304 1046.6 721 73.9
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 2.4e-301 1038.5 710 71.1
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 1.6e-300 1035.8 712 73.5
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 3.5e-300 1034.6 613 79.0
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 1.3e-299 1032.7 711 71.9
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 4.7e-297 1024.2 708 72.3
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 8.0e-297 1023.5 612 78.4
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 1.2e-292 1009.6 777 67.2
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 5.1e-291 1004.2 694 70.6
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 5.6e-290 1000.7 714 68.9
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 1.4e-288 996.1 714 67.9
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 2.3e-288 995.3 606 76.1
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 5.2e-288 994.2 671 71.7
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 5.2e-288 994.2 678 71.7
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 6.8e-288 993.8 704 70.0
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 7.5e-287 990.3 678 70.4
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 1.1e-285 986.5 670 70.3
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 1.9e-285 985.7 710 66.5
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 7.1e-285 983.8 620 74.4
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 1.6e-284 982.6 695 70.4
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 6.0e-284 980.7 668 71.6
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 2.3e-283 978.8 710 68.3
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 5.1e-283 977.6 687 71.2
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 7.3e-282 973.8 715 65.7
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 2.1e-281 972.2 691 67.6
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 1.1e-280 969.9 707 66.3
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 4.0e-280 968.0 619 74.6
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 8.9e-280 966.8 676 71.0
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 5.8e-279 964.1 579 78.2
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 9.9e-279 963.4 772 63.9
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 9.9e-279 963.4 666 71.0
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 2.2e-278 962.2 605 74.4
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 4.9e-278 961.1 703 70.4
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 1.6e-276 956.1 596 76.2
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 3.5e-276 954.9 693 70.3
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 3.9e-275 951.4 618 73.6
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 8.7e-275 950.3 758 63.1
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 2.4e-272 942.2 738 64.5
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 6.9e-272 940.6 773 61.3
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.5e-271 939.5 628 69.1
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 2.6e-271 938.7 581 75.9
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 3.4e-271 938.3 628 69.3
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.9e-270 934.5 757 63.5
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 3.2e-269 931.8 663 68.2
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 5.1e-267 924.5 674 69.7
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 1.9e-266 922.5 640 69.7
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 1.3e-265 919.8 605 71.6
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 1.6e-265 919.5 719 65.4
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 3.8e-262 908.3 725 63.2
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 5.4e-261 904.4 605 70.7
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 3.5e-260 901.7 581 72.8
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 3.9e-259 898.3 708 63.8
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 5.1e-259 897.9 721 63.7
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 6.7e-259 897.5 997 49.7
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 3.3e-258 895.2 533 78.4
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 2.0e-255 885.9 718 64.3
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 4.5e-255 884.8 599 68.3
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 7.6e-255 884.0 599 71.6
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 2.2e-254 882.5 530 78.3
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 2.9e-254 882.1 692 65.8
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 3.8e-254 881.7 861 54.1
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 1.9e-253 879.4 586 70.6
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 9.3e-253 877.1 774 58.7
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 1.3e-251 873.2 588 69.0
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 3.7e-249 865.1 566 73.5
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 4.0e-248 861.7 636 67.8
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 4.0e-248 861.7 664 65.1
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.5e-247 858.2 599 70.1
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 1.4e-245 853.2 526 75.7
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 9.3e-245 850.5 689 63.1
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.3e-243 846.7 526 75.3
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 9.7e-242 840.5 710 62.5
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 1.8e-232 809.7 483 76.8
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 6.9e-232 807.7 502 77.3
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.1e-229 800.4 749 56.7
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.1e-226 790.4 534 72.7
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 1.1e-224 783.9 705 61.3
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 5.0e-222 775.0 564 67.2
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.3e-217 760.4 510 69.2
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.1e-212 743.0 522 68.4
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 1.2e-210 737.3 509 71.3
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 5.7e-210 734.9 720 56.8
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 4.1e-208 728.8 691 58.3
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.5e-207 725.7 522 66.5
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 3.5e-207 725.7 593 60.4
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 7.0e-200 701.4 577 61.2
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 5.9e-199 698.4 528 67.2
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 7.7e-199 698.0 504 68.1
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 2.6e-194 682.9 437 73.0
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.2e-192 676.0 410 76.8
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 2.4e-184 649.8 727 52.0
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 1.0e-174 617.8 687 50.7
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 5.6e-173 612.1 391 73.7
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 3.3e-157 559.7 649 49.5
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 4.8e-156 555.8 353 74.8
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 5.4e-144 515.8 586 47.4
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 9.6e-141 505.0 379 64.6
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 3.0e-126 456.8 272 78.3
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.6e-111 407.9 331 61.0
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.1e-88 332.0 208 71.6
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.4e-86 325.1 297 58.6
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 2.4e-83 314.3 270 61.1
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.0e-77 294.7 669 33.5
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 8.6e-73 279.3 298 53.0
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 4.7e-71 273.5 242 59.5
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.8e-70 271.6 244 64.3
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 1.5e-64 251.9 259 57.1
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.0e-49 202.6 192 57.3
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.3e-48 197.6 139 73.4
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 2.0e-45 188.3 215 48.8
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 5.4e-43 180.3 214 50.0
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 7.8e-42 176.4 208 46.2
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 1.3e-41 175.6 664 25.3
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 9.6e-40 169.5 91 80.2
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 4.8e-39 167.2 472 24.8
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 6.2e-39 166.8 132 67.4
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.8e-38 165.2 193 50.3
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 6.9e-38 163.3 103 77.7
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 2.0e-37 161.8 573 25.3
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 1.7e-36 158.7 115 66.1
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 1.1e-35 156.0 118 60.2
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 6.7e-33 146.7 609 24.5
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 1.4e-30 139.0 328 29.6
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.4e-28 130.2 168 47.6
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 5.5e-27 127.1 78 65.4
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.0e-26 123.6 218 39.0
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 6.0e-26 123.6 78 74.4
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 6.0e-26 123.6 174 47.1
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.6e-18 99.0 132 42.4
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 6.0e-18 97.1 59 74.6
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 1.3e-15 89.4 63 68.3


User provided reference genes

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