Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 1.6e-127 459.5 243 100.0
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 2.6e-74 282.7 247 66.8
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 2.3e-70 269.6 224 67.0
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 6.7e-70 268.1 246 63.8
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 1.1e-69 267.3 224 68.8
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 3.3e-69 265.8 246 63.8
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 5.7e-69 265.0 250 64.4
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 6.3e-68 261.5 255 62.0
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 2.4e-67 259.6 252 60.7
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 4.5e-66 255.4 246 61.8
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 7.7e-66 254.6 246 61.0
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 1.3e-65 253.8 224 66.1
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 1.3e-65 253.8 220 66.4
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 2.2e-65 253.1 238 61.8
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 1.9e-64 250.0 239 60.7
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 9.4e-64 247.7 243 61.7
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 2.1e-63 246.5 224 60.7
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 4.6e-63 245.4 223 63.2
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 1.8e-62 243.4 241 60.2
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 2.3e-62 243.0 237 57.8
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 3.0e-62 242.7 235 60.9
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 3.0e-62 242.7 222 62.2
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 1.1e-61 240.7 244 57.4
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 1.5e-61 240.4 243 60.5
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 1.5e-61 240.4 226 60.6
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 3.3e-61 239.2 194 66.5
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 3.3e-61 239.2 222 61.3
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 4.3e-61 238.8 194 66.0
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 1.7e-60 236.9 231 61.9
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 1.7e-60 236.9 225 58.7
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 4.8e-60 235.3 245 58.8
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 8.2e-60 234.6 195 64.1
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 8.2e-60 234.6 194 64.9
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.1e-59 234.2 217 62.2
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 1.4e-59 233.8 244 58.6
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 1.8e-59 233.4 246 58.1
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 3.1e-59 232.6 192 64.1
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 5.3e-59 231.9 225 58.2
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 6.9e-59 231.5 192 64.1
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 4.5e-58 228.8 228 57.0
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 5.9e-58 228.4 253 56.1
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 7.7e-58 228.0 194 63.4
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 7.7e-58 228.0 194 63.4
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 3.8e-57 225.7 241 56.4
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 5.0e-57 225.3 195 61.5
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 5.0e-57 225.3 176 67.6
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 6.5e-57 224.9 208 61.5
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 8.5e-57 224.6 235 54.0
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 1.9e-56 223.4 205 63.4
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 4.2e-56 222.2 220 56.8
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 5.5e-56 221.9 242 55.0
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 7.2e-56 221.5 193 63.7
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 1.6e-55 220.3 214 60.3
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 2.7e-55 219.5 242 54.5
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 3.6e-55 219.2 221 57.0
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 4.7e-55 218.8 176 65.9
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 6.1e-55 218.4 226 57.1
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 1.4e-54 217.2 227 58.6
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 1.4e-54 217.2 164 68.3
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 6.7e-54 214.9 224 55.8
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 8.8e-54 214.5 237 55.3
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 8.8e-54 214.5 195 63.1
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 1.5e-53 213.8 213 56.3
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 1.5e-53 213.8 174 63.2
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 2.6e-53 213.0 227 55.9
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 3.3e-53 212.6 212 57.5
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 4.4e-53 212.2 207 57.5
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 4.4e-53 212.2 221 55.2
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 4.4e-53 212.2 172 64.5
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 5.7e-53 211.8 226 56.6
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 1.3e-52 210.7 222 54.5
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 1.3e-52 210.7 236 53.8
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 2.8e-52 209.5 222 53.6
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 2.8e-52 209.5 198 59.6
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 3.7e-52 209.1 233 54.5
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 8.2e-52 208.0 222 53.6
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 1.1e-51 207.6 222 54.5
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 5.3e-51 205.3 287 48.8
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 7.0e-51 204.9 237 52.3
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 1.3e-49 200.7 220 56.4
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 4.7e-47 192.2 168 62.5
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 1.7e-44 183.7 218 52.3
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.4e-43 180.6 168 58.9
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 9.1e-43 177.9 167 58.1
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.2e-42 177.6 242 47.9
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 1.0e-41 174.5 239 47.7
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 1.3e-41 174.1 172 57.6
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 7.2e-40 168.3 124 69.4
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.3e-38 163.3 235 47.7
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 5.2e-38 162.2 223 48.4
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 5.2e-38 162.2 189 52.9
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 3.4e-37 159.5 189 46.0
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 2.8e-36 156.4 188 48.4
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 2.5e-32 143.3 209 47.8
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 1.6e-31 140.6 206 42.2
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 2.7e-31 139.8 176 45.5
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 4.0e-30 136.0 135 57.0
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 1.7e-28 130.6 101 68.3
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.6e-26 124.0 81 76.5
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 8.6e-25 118.2 91 69.2
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 1.8e-22 110.5 94 61.7
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 9.8e-21 104.8 264 33.7
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 1.3e-20 104.4 73 68.5
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 4.5e-18 95.9 110 50.0
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 2.7e-10 70.1 53 67.9
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 4.3e-08 62.8 132 38.6
SGA_v2.0_scaffold54G19517 Striga asiatica HOM05D007221 ORTHO05D009204 1.6e-07 60.8 62 56.5


User provided reference genes

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