Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 7.7e-233 810.1 397 100.0
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 4.9e-187 657.9 396 79.0
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 4.8e-174 614.8 392 77.3
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 9.0e-173 610.5 396 74.7
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 7.6e-172 607.4 362 80.4
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.1e-170 603.6 390 76.9
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 7.1e-170 600.9 396 74.0
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.3e-168 596.7 396 74.2
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 3.9e-168 595.1 392 74.2
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 5.6e-167 591.3 391 74.2
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 5.6e-167 591.3 365 78.1
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 7.4e-167 590.9 394 73.9
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.6e-166 589.7 387 75.2
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 2.8e-166 589.0 391 74.9
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 8.1e-166 587.4 397 71.8
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.1e-165 587.0 394 73.9
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.4e-165 585.9 390 73.3
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.0e-165 585.1 390 73.3
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 5.3e-165 584.7 389 74.0
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.2e-164 583.6 364 76.4
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.6e-164 582.4 360 77.2
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.4e-164 582.0 390 73.1
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 4.5e-164 581.6 396 72.2
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.2e-163 579.3 368 76.4
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 2.2e-163 579.3 365 75.6
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 2.2e-163 579.3 365 75.6
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.2e-163 579.3 396 72.0
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.9e-163 578.9 389 73.5
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 3.8e-163 578.6 388 71.4
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 4.9e-163 578.2 343 79.6
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 8.4e-163 577.4 363 76.3
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 8.4e-163 577.4 373 75.3
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.4e-162 576.6 389 73.3
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.4e-162 576.6 399 72.2
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.9e-162 576.2 388 72.9
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 7.1e-162 574.3 397 71.8
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 9.3e-162 573.9 399 71.4
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.2e-161 573.5 346 78.6
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.7e-161 572.4 387 72.9
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.7e-161 572.4 387 72.9
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.7e-161 572.4 367 74.4
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.7e-161 572.4 366 73.8
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 3.5e-161 572.0 343 78.4
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 6.0e-161 571.2 387 72.6
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.0e-160 570.5 345 78.6
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.0e-160 570.5 399 71.2
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.3e-160 570.1 387 72.9
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.3e-160 570.1 363 74.1
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.8e-160 569.7 362 75.1
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 1.8e-160 569.7 362 75.4
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 3.0e-160 568.9 349 77.9
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 3.0e-160 568.9 364 75.3
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 5.1e-160 568.2 362 75.4
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 6.7e-160 567.8 396 69.7
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 4.3e-159 565.1 396 70.5
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.8e-157 559.7 341 77.1
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 3.1e-157 558.9 365 74.2
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.1e-157 558.9 363 73.6
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.1e-157 558.9 397 71.0
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 4.0e-157 558.5 363 74.7
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.0e-157 558.5 363 74.7
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 4.0e-157 558.5 360 75.3
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.5e-156 556.6 365 74.5
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 4.5e-156 555.1 372 72.3
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.7e-155 553.1 344 77.0
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.8e-155 552.0 345 76.2
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.5e-154 549.3 352 73.6
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.5e-154 549.3 400 66.5
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 9.3e-154 547.4 351 73.5
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 4.6e-153 545.0 352 72.7
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 4.6e-153 545.0 397 66.2
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 7.9e-153 544.3 369 69.6
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.3e-152 542.7 373 70.0
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 3.9e-152 542.0 392 67.9
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.5e-151 540.0 342 75.4
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.9e-151 539.7 376 68.6
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.5e-151 539.3 369 69.4
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 2.5e-151 539.3 317 77.9
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.5e-151 539.3 343 74.1
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 3.3e-151 538.9 367 69.8
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.7e-151 538.1 361 72.9
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.4e-151 537.7 360 72.8
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 7.4e-151 537.7 342 74.0
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 9.7e-151 537.3 396 69.9
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.6e-150 536.6 378 68.5
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.6e-150 536.6 346 73.7
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.6e-150 536.6 407 65.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 3.7e-150 535.4 364 70.1
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 6.3e-150 534.6 362 69.1
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 6.3e-150 534.6 368 69.0
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.1e-149 533.9 364 70.1
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.2e-147 526.2 362 69.1
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.2e-147 526.2 332 74.7
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.4e-146 523.5 343 73.2
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 2.5e-146 522.7 366 68.3
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 5.5e-146 521.5 360 67.5
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 7.2e-146 521.2 310 79.0
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 9.4e-146 520.8 392 65.1
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 2.7e-145 519.2 400 64.5
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.8e-144 516.5 338 73.7
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 3.0e-144 515.8 361 67.9
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 6.7e-144 514.6 389 65.6
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.5e-143 512.7 346 71.4
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 7.4e-143 511.1 382 66.8
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 9.7e-143 510.8 366 68.0
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.8e-142 509.2 361 66.5
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 5.3e-141 505.0 402 64.7
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 5.3e-141 505.0 363 66.1
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 6.5e-139 498.0 306 75.8
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 6.5e-139 498.0 394 64.0
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.7e-137 492.7 343 68.5
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.0e-136 490.7 366 65.3
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.3e-134 483.8 357 67.5
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.8e-131 472.2 341 66.9
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 2.1e-129 466.5 397 60.5
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 8.0e-129 464.5 362 63.5
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 7.4e-127 458.0 376 62.2
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.7e-126 456.8 389 59.1
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 5.3e-125 451.8 374 61.2
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 7.0e-125 451.4 365 60.0
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.9e-124 448.4 318 68.6
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 9.4e-122 441.0 303 66.7
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.0e-120 435.6 342 60.5
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.5e-119 433.7 343 63.6
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.3e-118 428.3 287 72.5
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.2e-116 424.1 232 83.6
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.0e-112 411.0 324 60.2
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.4e-109 399.8 305 64.6
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 7.0e-109 398.3 314 62.4
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 8.6e-107 391.3 395 53.9
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.9e-106 390.2 395 51.4
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.8e-101 373.6 198 86.9
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.2e-100 370.9 202 85.1
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.2e-92 344.4 198 78.8
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.9e-90 337.0 219 73.5
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.8e-89 333.2 206 77.2
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.7e-86 323.9 235 68.9
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.2e-84 317.8 231 66.2
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.7e-83 313.9 296 54.4
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.5e-76 289.7 229 64.2
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.9e-74 283.9 397 38.8
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.1e-72 276.6 208 63.5
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.2e-70 270.4 341 42.5
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.1e-69 268.1 303 42.9
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 5.4e-69 265.8 221 61.5
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 2.1e-60 237.3 198 61.1
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 7.9e-60 235.3 406 35.0
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.8e-49 199.5 125 76.8
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.4e-48 198.0 366 35.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.1e-37 159.1 148 57.4
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.3e-34 150.2 117 66.7
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 3.1e-32 143.7 155 53.5
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.4e-24 118.2 64 82.8
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 2.5e-21 107.5 57 84.2


User provided reference genes

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