Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 4.9e-134 481.1 238 100.0
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 9.2e-40 167.9 200 47.5
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.2e-39 167.5 233 43.8
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 3.0e-38 162.9 223 45.7
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 5.1e-38 162.2 196 48.5
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 7.3e-37 158.3 194 47.4
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 3.6e-36 156.0 221 42.5
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 1.1e-35 154.5 198 43.9
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 1.1e-35 154.5 198 43.9
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 8.9e-35 151.4 211 43.6
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 1.2e-34 151.0 192 45.3
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.5e-34 150.6 142 53.5
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 1.3e-33 147.5 198 43.9
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 2.2e-33 146.7 191 46.1
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 6.4e-33 145.2 193 44.0
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 6.4e-33 145.2 196 45.9
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 1.9e-32 143.7 197 44.7
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 2.4e-32 143.3 187 44.4
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 2.4e-32 143.3 201 43.8
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 5.4e-32 142.1 204 45.6
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 5.4e-32 142.1 149 51.0
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 9.2e-32 141.4 148 48.6
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 1.2e-31 141.0 199 43.7
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 1.6e-31 140.6 206 44.7
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.7e-31 139.8 194 43.3
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 6.0e-31 138.7 206 42.2
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 1.0e-30 137.9 206 41.7
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 1.3e-30 137.5 212 40.6
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 1.7e-30 137.1 148 50.7
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 6.6e-30 135.2 149 49.0
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 6.6e-30 135.2 141 50.4
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 1.2e-28 131.0 191 41.4
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 1.2e-28 131.0 196 42.3
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 2.8e-28 129.8 191 41.4
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 4.7e-28 129.0 194 41.2
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 8.1e-28 128.3 183 44.3
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 8.1e-28 128.3 157 45.2
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.4e-27 127.5 183 41.0
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.8e-27 127.1 216 43.1
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 1.2e-26 124.4 190 42.6
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 1.2e-26 124.4 147 46.3
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 1.2e-26 124.4 244 38.9
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 2.6e-26 123.2 196 44.9
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 4.4e-26 122.5 147 49.0
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 7.6e-26 121.7 147 48.3
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.3e-25 120.9 211 42.7
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 6.4e-25 118.6 234 38.0
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 6.4e-25 118.6 234 38.0
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 1.4e-24 117.5 149 43.6
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 1.9e-24 117.1 218 39.0
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 3.2e-24 116.3 239 36.0
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 5.4e-24 115.5 235 36.6
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 5.4e-24 115.5 192 40.6
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 9.3e-24 114.8 207 37.2
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 7.8e-23 111.7 176 37.5
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 1.0e-22 111.3 150 45.3
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.7e-22 110.5 204 41.7
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.0e-22 109.8 130 46.9
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 6.6e-22 108.6 173 39.3
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 8.7e-22 108.2 147 45.6
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 1.9e-21 107.1 176 36.4
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 4.3e-21 105.9 145 41.4
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 9.6e-21 104.8 162 42.0
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 6.2e-20 102.1 168 38.7
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 1.2e-18 97.8 149 38.3
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 1.2e-18 97.8 232 31.9
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 2.0e-18 97.1 243 31.7
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.4e-18 96.3 116 46.6
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 4.5e-18 95.9 147 39.5
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 5.8e-18 95.5 145 38.6
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 7.6e-18 95.1 147 39.5
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 9.9e-18 94.7 197 36.5
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 2.9e-17 93.2 216 34.7
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 3.8e-17 92.8 133 40.6
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.1e-16 91.3 166 37.3
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.4e-16 90.1 162 37.0
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 2.4e-16 90.1 155 38.1
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.5e-15 86.3 198 32.3
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 7.9e-15 85.1 164 32.3
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 2.3e-14 83.6 144 32.6
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 3.9e-14 82.8 191 36.1
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 5.1e-14 82.4 195 33.3
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 8.7e-14 81.6 211 33.6
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 2.5e-13 80.1 152 32.2
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 3.3e-13 79.7 191 35.6
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 7.4e-13 78.6 153 37.3
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 8.1e-12 75.1 162 29.6
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 2.4e-11 73.6 133 35.3
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 3.1e-11 73.2 145 33.1
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.0e-11 72.8 174 35.1
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 3.4e-10 69.7 140 37.9
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 3.4e-10 69.7 157 33.1
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 3.4e-10 69.7 87 44.8
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 4.5e-10 69.3 140 35.0
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 1.0e-09 68.2 146 36.3
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 1.3e-09 67.8 140 36.4
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 1.3e-09 67.8 151 33.1
Medtr4g079340 Medicago truncatula HOM05D007287 ORTHO05D008965 1.4e-08 64.3 78 41.0
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 1.9e-08 63.9 200 29.0
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 3.2e-08 63.2 199 28.1
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 5.5e-08 62.4 139 36.0
ECA247G1060 Erigeron canadensis HOM05D051946 ORTHO05D008965 7.1e-08 62.0 140 33.6
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 7.1e-08 62.0 153 30.7
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 2.1e-07 60.5 120 33.3
TPR.G34860 Trifolium pratense HOM05D007287 ORTHO05D008965 2.7e-07 60.1 97 41.2
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 6.0e-07 58.9 81 39.5
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 6.0e-07 58.9 81 43.2
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 7.9e-07 58.5 81 42.0
A07p18880 Brassica napus HOM05D009615 ORTHO05D011760 2.3e-06 57.0 81 42.0
BraA07t29596Z Brassica rapa HOM05D009615 ORTHO05D011760 2.3e-06 57.0 81 42.0
BolC4t23814H Brassica oleracea HOM05D009615 ORTHO05D011760 3.0e-06 56.6 81 40.7
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.0e-06 56.6 52 51.9
Carub.0004s0923 Capsella rubella HOM05D009615 ORTHO05D011760 3.9e-06 56.2 83 44.6
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 5.1e-06 55.8 81 42.0
Psat7g166880 Pisum sativum HOM05D007287 ORTHO05D008965 6.7e-06 55.5 48 52.1


User provided reference genes

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