Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0994 Punica granatum HOM05D009524 ORTHO05D001207 1.2e-71 273.1 136 100.0
PGR031G2424 Punica granatum HOM05D001578 ORTHO05D001207 2.5e-29 132.5 127 54.3
Gohir.D01G023568 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.9e-18 96.3 127 41.7
Gorai.002G031200 Gossypium raimondii HOM05D001578 ORTHO05D001207 3.3e-18 95.5 127 41.7
Gohir.A01G035300 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.3e-16 88.2 127 39.4
Cpa.g.sc9.24 Carica papaya HOM05D001578 ORTHO05D001207 2.6e-15 85.9 130 39.2
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 5.9e-15 84.7 127 39.4
BcaB04g20861 Brassica carinata HOM05D009524 ORTHO05D001207 1.1e-13 80.5 125 38.4
AT3G17152 Arabidopsis thaliana HOM05D009524 ORTHO05D001207 4.2e-13 78.6 124 37.9
A01p37140 Brassica napus HOM05D009524 ORTHO05D001207 4.2e-13 78.6 125 37.6
BraA01t03775Z Brassica rapa HOM05D009524 ORTHO05D001207 4.2e-13 78.6 125 37.6
AL3G30140 Arabidopsis lyrata HOM05D009524 ORTHO05D001207 7.2e-13 77.8 124 38.7
Ciclev10006511m.g Citrus clementina HOM05D001578 ORTHO05D001207 7.2e-13 77.8 127 33.9
BcaB04g20860 Brassica carinata HOM05D009524 ORTHO05D001207 9.4e-13 77.4 125 37.6
A03p07210 Brassica napus HOM05D009524 ORTHO05D001207 1.6e-12 76.6 125 35.2
BraA03t10043Z Brassica rapa HOM05D009524 ORTHO05D001207 2.7e-12 75.9 125 35.2
BcaB04g20858 Brassica carinata HOM05D009524 ORTHO05D001207 3.6e-12 75.5 125 36.0
BcaC09g48672 Brassica carinata HOM05D009524 ORTHO05D001207 4.7e-12 75.1 125 36.8
C01p47080 Brassica napus HOM05D009524 ORTHO05D001207 4.7e-12 75.1 125 36.8
CARHR092410 Cardamine hirsuta HOM05D009524 ORTHO05D001207 6.1e-12 74.7 123 35.8
Hma1.2p1_0078F.1_g039850 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 7.9e-12 74.3 127 36.2
Hma1.2p1_1400F.1_g280915 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 7.9e-12 74.3 127 36.2
C03p08210 Brassica napus HOM05D009524 ORTHO05D001207 1.8e-11 73.2 125 35.2
BolC1t04674H Brassica oleracea HOM05D009524 ORTHO05D001207 1.8e-11 73.2 125 36.0
BolC3t13318H Brassica oleracea HOM05D009524 ORTHO05D001207 3.0e-11 72.4 125 34.4
CARHR092420 Cardamine hirsuta HOM05D009524 ORTHO05D001207 8.8e-11 70.9 123 31.7
CSS0037733 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 1.1e-10 70.5 130 36.9
Sp3g15360 Schrenkiella parvula HOM05D009524 ORTHO05D014763 2.6e-10 69.3 117 35.0
THA.LOC104802609 Tarenaya hassleriana HOM05D009524 ORTHO05D001207 4.4e-10 68.6 125 32.8
Hma1.2p1_0078F.1_g039860 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 2.2e-09 66.2 116 35.3
Rhsim03G0038400 Rhododendron simsii HOM05D001578 ORTHO05D001207 6.3e-09 64.7 132 34.1
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 1.1e-08 63.9 126 34.1
Rhsim03G0038200 Rhododendron simsii HOM05D001578 ORTHO05D001207 1.1e-08 63.9 132 35.6
Rhsim01G0111900 Rhododendron simsii HOM05D001578 ORTHO05D001207 1.4e-08 63.5 135 34.8
CARHR092400 Cardamine hirsuta HOM05D009524 ORTHO05D001207 4.1e-08 62.0 124 35.5
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 7.0e-08 61.2 125 34.4
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.2e-07 60.5 125 34.4
EL10Ac3g05919 Beta vulgaris HOM05D009524 ORTHO05D001207 1.5e-07 60.1 122 32.0
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 1.5e-07 60.1 126 31.7
Prupe.3G007700 Prunus persica HOM05D001578 ORTHO05D001207 1.5e-07 60.1 131 32.8
Manes.10G035700 Manihot esculenta HOM05D004113 ORTHO05D005233 2.0e-07 59.7 131 29.8
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 2.0e-07 59.7 125 33.6
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 2.0e-07 59.7 128 33.6
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 2.0e-07 59.7 128 33.6
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 4.5e-07 58.5 125 32.0
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 4.5e-07 58.5 125 33.6
Rhsim04G0241400 Rhododendron simsii HOM05D001578 ORTHO05D001207 5.9e-07 58.2 83 39.8
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 5.9e-07 58.2 128 32.8
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 1.0e-06 57.4 125 31.2
Thecc.01G317500 Theobroma cacao HOM05D001578 ORTHO05D001207 1.0e-06 57.4 131 32.8
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 1.3e-06 57.0 127 30.7
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 1.7e-06 56.6 126 30.2
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 2.2e-06 56.2 123 32.5
Lj6g0013229 Lotus japonicus HOM05D001578 ORTHO05D001207 2.2e-06 56.2 123 30.1
TWI53G0804 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 2.2e-06 56.2 128 35.9
Rhsim03G0038600 Rhododendron simsii HOM05D000036 ORTHO05D005472 2.9e-06 55.8 97 35.1
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 3.8e-06 55.5 129 32.6
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 5.0e-06 55.1 125 32.8
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 5.0e-06 55.1 126 31.0
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 5.0e-06 55.1 126 31.0
Rhsim03G0038700 Rhododendron simsii HOM05D001578 ORTHO05D001207 5.0e-06 55.1 97 35.1
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 6.5e-06 54.7 125 31.2
Prupe.3G146800 Prunus persica HOM05D001578 ORTHO05D001207 6.5e-06 54.7 125 28.0


User provided reference genes

Program Settings