Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 3.0e-102 375.2 187 100.0
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 2.1e-63 246.1 188 70.2
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 5.2e-62 241.5 185 69.7
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 6.7e-62 241.1 188 68.6
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 4.4e-61 238.4 188 68.1
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 2.2e-60 236.1 188 66.0
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 7.0e-59 231.1 189 66.7
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 9.1e-59 230.7 192 66.1
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 9.1e-59 230.7 181 68.0
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 1.2e-58 230.3 177 67.2
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 2.0e-58 229.6 187 63.6
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 2.0e-58 229.6 187 63.6
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 5.0e-57 224.9 179 67.0
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 1.2e-55 220.3 189 63.0
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 3.6e-55 218.8 192 63.0
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 1.0e-54 217.2 187 63.6
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 1.8e-54 216.5 196 60.2
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 4.0e-54 215.3 187 62.0
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 5.2e-54 214.9 187 59.9
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 2.6e-53 212.6 183 60.1
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 3.4e-53 212.2 191 63.9
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 4.4e-53 211.8 188 62.8
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 5.7e-53 211.5 187 61.0
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 9.8e-53 210.7 188 62.8
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 1.7e-52 209.9 187 61.5
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 1.7e-52 209.9 193 60.6
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 1.1e-51 207.2 185 57.3
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 2.4e-51 206.1 186 59.1
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 3.1e-51 205.7 185 58.4
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 3.1e-51 205.7 180 59.4
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 4.1e-51 205.3 191 61.3
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 7.0e-51 204.5 187 59.4
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 7.7e-50 201.1 181 56.9
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 1.0e-49 200.7 181 56.4
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 1.7e-49 199.9 193 58.0
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 3.8e-49 198.7 201 58.2
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 5.0e-49 198.4 174 59.2
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 1.1e-48 197.2 190 58.4
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 1.5e-48 196.8 203 56.7
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 1.5e-48 196.8 183 61.2
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 1.9e-48 196.4 188 59.0
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 1.9e-48 196.4 177 58.2
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 2.1e-47 193.0 189 56.1
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 8.0e-47 191.0 181 56.9
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 3.0e-46 189.1 179 58.7
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 6.8e-46 188.0 181 55.8
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 1.5e-45 186.8 179 58.1
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 2.6e-45 186.0 183 54.6
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 2.6e-45 186.0 204 55.4
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 5.7e-45 184.9 182 54.4
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 1.7e-44 183.3 181 58.0
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 3.7e-44 182.2 188 54.3
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 3.1e-43 179.1 142 64.8
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 4.1e-43 178.7 186 55.4
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 1.6e-42 176.8 186 52.7
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 2.0e-42 176.4 185 54.6
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 2.7e-42 176.0 165 56.4
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 5.9e-42 174.9 160 55.6
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 8.6e-41 171.0 156 60.3
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 4.3e-40 168.7 152 55.3
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 5.6e-40 168.3 181 52.5
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 1.2e-39 167.2 171 56.1
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 1.6e-39 166.8 195 49.7
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 3.6e-39 165.6 195 50.3
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 1.0e-38 164.1 185 48.1
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 4.0e-38 162.2 175 54.9
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 1.2e-37 160.6 184 46.2
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 3.4e-37 159.1 195 47.7
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 4.1e-35 152.1 201 48.3
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 7.0e-35 151.4 195 47.2
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 1.3e-33 147.1 197 46.7
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 2.3e-33 146.4 195 46.7
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 7.3e-32 141.4 196 44.9
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 7.3e-32 141.4 196 44.9
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 7.3e-32 141.4 196 44.9
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 9.5e-32 141.0 121 58.7
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 2.1e-31 139.8 194 45.4
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 3.6e-31 139.0 181 48.1
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 1.8e-30 136.7 193 44.0
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 1.8e-30 136.7 193 44.0
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 2.9e-28 129.4 193 43.5
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 4.3e-24 115.5 116 53.4
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 4.1e-19 99.0 175 40.0
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 4.3e-16 89.0 168 38.7
ATR0810G102 Amborella trichopoda HOM05D000180 ORTHO05D000099 3.3e-08 62.8 103 35.0
ATR0810G039 Amborella trichopoda HOM05D000180 ORTHO05D000099 5.6e-08 62.0 103 35.0
Mapoly0009s0065 Marchantia polymorpha HOM05D000180 ORTHO05D000099 9.6e-08 61.2 104 40.4
DCAR_019269 Daucus carota HOM05D000201 ORTHO05D000490 1.6e-07 60.5 147 31.3
FAN02G4293 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.8e-07 59.7 82 41.5
FAN09G1602 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.8e-07 59.7 82 41.5
Mapoly0070s0018 Marchantia polymorpha HOM05D001508 ORTHO05D000099 3.6e-07 59.3 145 28.3
TPR.G4666 Trifolium pratense HOM05D000180 ORTHO05D000099 3.6e-07 59.3 99 32.3
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 4.7e-07 58.9 154 27.9
Oeu063298.1 Olea europaea HOM05D000180 ORTHO05D000099 4.7e-07 58.9 101 37.6
SEGI_32439 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 4.7e-07 58.9 106 34.0
Migut.B00108 Erythranthe guttata HOM05D000180 ORTHO05D000099 6.2e-07 58.5 94 40.4
FAN14G0740 Fragaria x ananassa HOM05D000180 ORTHO05D000099 6.2e-07 58.5 81 38.3
Phvul.005G032400 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 6.2e-07 58.5 85 36.5
RcHm_v2.0_Chr2g0158861 Rosa chinensis HOM05D000180 ORTHO05D000099 6.2e-07 58.5 81 40.7
SMO111G0080 Selaginella moellendorffii HOM05D001508 ORTHO05D001381 6.2e-07 58.5 139 32.4
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 6.2e-07 58.5 146 32.2
PSO339G1277 Papaver somniferum HOM05D000180 ORTHO05D000099 8.1e-07 58.2 100 34.0
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 1.1e-06 57.8 69 49.3
PSO384G3515 Papaver somniferum HOM05D000180 ORTHO05D000099 1.1e-06 57.8 85 36.5
FvH4_6g42930 Fragaria vesca HOM05D000180 ORTHO05D000099 1.4e-06 57.4 85 38.8
FAN14G4538 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.4e-06 57.4 85 38.8
Mapoly0099s0036 Marchantia polymorpha HOM05D000180 ORTHO05D010079 1.4e-06 57.4 104 33.7
PSO339G0829 Papaver somniferum HOM05D000180 ORTHO05D000099 1.8e-06 57.0 101 31.7
Mapoly0041s0132 Marchantia polymorpha HOM05D000180 ORTHO05D000099 2.4e-06 56.6 95 38.9
AL8G18810 Arabidopsis lyrata HOM05D000180 ORTHO05D000099 3.1e-06 56.2 78 39.7
AL8G18840 Arabidopsis lyrata HOM05D000180 ORTHO05D000099 3.1e-06 56.2 78 39.7
FAN05G0464 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.1e-06 56.2 81 38.3
FAN13G0477 Fragaria x ananassa HOM05D001508 ORTHO05D001381 3.1e-06 56.2 113 31.9
Glyma.19G151200 Glycine max HOM05D000180 ORTHO05D000099 3.1e-06 56.2 129 28.7
Lj3g0011857 Lotus japonicus HOM05D000180 ORTHO05D000099 3.1e-06 56.2 99 38.4
Phvul.005G032700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.1e-06 56.2 101 31.7
Prupe.3G215500 Prunus persica HOM05D000180 ORTHO05D000099 3.1e-06 56.2 97 34.0
Aa31LG7G6890 Aethionema arabicum HOM05D000180 ORTHO05D000099 4.0e-06 55.8 78 38.5
MSTRG.18525 Avicennia marina HOM05D000180 ORTHO05D000099 4.0e-06 55.8 87 39.1
Ca_19514_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 4.0e-06 55.8 99 32.3
Glyma.19G151100 Glycine max HOM05D000180 ORTHO05D000099 4.0e-06 55.8 129 28.7
TAR628G0454 Trochodendron aralioides HOM05D000180 ORTHO05D000099 4.0e-06 55.8 100 38.0
Zm00001eb166630 Zea mays HOM05D000180 ORTHO05D000099 4.0e-06 55.8 94 36.2
Ah.13g075610 Amaranthus hybridus HOM05D000180 ORTHO05D000099 5.2e-06 55.5 114 36.0
BcaC05g26195 Brassica carinata HOM05D000180 ORTHO05D000099 5.2e-06 55.5 78 39.7
C05p22000 Brassica napus HOM05D000180 ORTHO05D000099 5.2e-06 55.5 78 39.7
BolC5t30897H Brassica oleracea HOM05D000180 ORTHO05D000099 5.2e-06 55.5 78 39.7
Thhalv10008857m.g Eutrema salsugineum HOM05D000180 ORTHO05D000099 5.2e-06 55.5 96 34.4
Glyma.03G147800 Glycine max HOM05D000180 ORTHO05D000099 5.2e-06 55.5 115 33.0
SMO141G0257 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 5.2e-06 55.5 103 37.9
SEGI_17706 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 5.2e-06 55.5 157 31.2
Ah.01g022720 Amaranthus hybridus HOM05D000180 ORTHO05D000099 6.8e-06 55.1 139 32.4
ATR0810G236 Amborella trichopoda HOM05D000180 ORTHO05D000099 6.8e-06 55.1 98 33.7
AT1G22900 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 6.8e-06 55.1 85 35.3
CDE06G2414 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 6.8e-06 55.1 96 37.5
FvH4_7g31480 Fragaria vesca HOM05D000180 ORTHO05D000099 6.8e-06 55.1 146 32.9
FAN05G1781 Fragaria x ananassa HOM05D000180 ORTHO05D000099 6.8e-06 55.1 152 28.3
Glyma.11G150400 Glycine max HOM05D000180 ORTHO05D000099 6.8e-06 55.1 102 36.3
Phvul.001G145600 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 6.8e-06 55.1 127 29.9
PGR004G1159 Punica granatum HOM05D000180 ORTHO05D000099 6.8e-06 55.1 85 38.8
SalBow6G2430 Salvia bowleyana HOM05D000180 ORTHO05D000099 6.8e-06 55.1 99 38.4
Haze_22988 Corylus avellana HOM05D000180 ORTHO05D000099 8.9e-06 54.7 109 30.3
Glyma.03G147700 Glycine max HOM05D000180 ORTHO05D000099 8.9e-06 54.7 129 28.7
Peaxi162Scf00769g00038 Petunia axillaris HOM05D000180 ORTHO05D000099 8.9e-06 54.7 109 40.4


User provided reference genes

Program Settings