Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0704 Punica granatum HOM05D007250 ORTHO05D009162 5.2e-125 451.1 225 100.0
Eucgr.F04459 Eucalyptus grandis HOM05D007250 ORTHO05D009162 1.3e-54 217.2 204 56.4
Duzib213G0161 Durio zibethinus HOM05D007250 ORTHO05D009162 6.2e-54 214.9 206 53.4
Gohir.D13G127200 Gossypium hirsutum HOM05D007250 ORTHO05D009162 2.4e-53 213.0 244 48.4
Manes.06G175800 Manihot esculenta HOM05D007250 ORTHO05D009162 5.3e-53 211.8 246 46.7
Gorai.013G142400 Gossypium raimondii HOM05D007250 ORTHO05D009162 2.6e-52 209.5 249 47.4
GSVIVG01036780001 Vitis vinifera HOM05D007250 ORTHO05D009162 7.6e-52 208.0 226 49.6
Thecc.07G179900 Theobroma cacao HOM05D007250 ORTHO05D009162 2.2e-51 206.5 229 48.5
Nn3g20174 Nelumbo nucifera HOM05D007250 ORTHO05D009162 2.9e-51 206.1 246 45.9
Ciclev10005586m.g Citrus clementina HOM05D007250 ORTHO05D009162 8.4e-51 204.5 206 51.5
Sabra07G0056900 Salix brachista HOM05D007250 ORTHO05D009162 1.1e-50 204.1 205 50.2
ClCG02G018630 Citrullus lanatus HOM05D007250 ORTHO05D009162 1.9e-50 203.4 207 50.7
Potri.007G069400 Populus trichocarpa HOM05D007250 ORTHO05D009162 3.2e-50 202.6 205 50.2
CSS0017513 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 7.1e-50 201.4 206 51.0
Haze_07815 Corylus avellana HOM05D007250 ORTHO05D009162 9.3e-50 201.1 222 47.7
Hma1.2p1_0151F.1_g067310 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 9.3e-50 201.1 204 52.5
CANSAT56G4154 Cannabis sativa HOM05D007250 ORTHO05D009162 1.6e-49 200.3 218 48.6
Sed0012120 Sechium edule HOM05D007250 ORTHO05D009162 2.7e-49 199.5 220 48.2
Lj3g0020784 Lotus japonicus HOM05D007250 ORTHO05D009162 3.5e-49 199.1 219 47.0
TWI38G0063 Tripterygium wilfordii HOM05D007250 ORTHO05D009162 4.6e-49 198.7 206 48.5
CiPaw.11G061700 Carya illinoinensis HOM05D007250 ORTHO05D009162 1.0e-48 197.6 222 43.7
CsaV3_6G013550 Cucumis sativus L. HOM05D007250 ORTHO05D009162 1.3e-48 197.2 208 49.0
Glyma.15G260800 Glycine max HOM05D007250 ORTHO05D009162 1.8e-48 196.8 211 47.9
Nitab4.5_0003777g0030 Nicotiana tabacum HOM05D007250 ORTHO05D009162 6.7e-48 194.9 203 49.3
CSS0024774 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 1.1e-47 194.1 203 50.2
PSO541G5100 Papaver somniferum HOM05D007250 ORTHO05D009162 1.5e-47 193.7 224 46.0
MSTRG.16100 Avicennia marina HOM05D007250 ORTHO05D009162 1.9e-47 193.4 204 48.0
Lsat_1_v5_gn_7_75520 Lactuca sativa HOM05D007250 ORTHO05D009162 1.9e-47 193.4 232 47.0
unitig_748.g7850 Utricularia gibba HOM05D007250 ORTHO05D001497 4.3e-47 192.2 258 43.0
Lalb_Chr25g0284601 Lupinus albus HOM05D007250 ORTHO05D009162 7.4e-47 191.4 220 46.4
vmacro11701 Vaccinium macrocarpon HOM05D007250 ORTHO05D009162 7.4e-47 191.4 254 43.7
HanXRQChr05g0160551 Helianthus annuus HOM05D007250 ORTHO05D009162 1.3e-46 190.7 206 48.1
Dinv19589 Davidia involucrata HOM05D007250 ORTHO05D009162 2.8e-46 189.5 195 51.3
Phvul.005G050100 Phaseolus vulgaris HOM05D007250 ORTHO05D009162 3.7e-46 189.1 214 45.3
Lj2A15T78 Lonicera japonica HOM05D007250 ORTHO05D009162 6.2e-46 188.3 202 50.0
Thhalv10008448m.g Eutrema salsugineum HOM05D007250 ORTHO05D009162 1.4e-45 187.2 237 44.7
Medtr1g060720 Medicago truncatula HOM05D007250 ORTHO05D009162 1.4e-45 187.2 240 42.9
Peaxi162Scf00114g00116 Petunia axillaris HOM05D007250 ORTHO05D009162 1.8e-45 186.8 203 48.3
Solyc10g005540.4 Solanum lycopersicum HOM05D007250 ORTHO05D009162 3.1e-45 186.0 203 47.8
RcHm_v2.0_Chr6g0272151 Rosa chinensis HOM05D007250 ORTHO05D009162 6.9e-45 184.9 221 45.7
Carub.0001s1619 Capsella rubella HOM05D007250 ORTHO05D009162 9.0e-45 184.5 235 43.0
Ca_03591_v3 Cicer arietinum L. HOM05D007250 ORTHO05D009162 1.2e-44 184.1 204 46.1
A09p60900 Brassica napus HOM05D007250 ORTHO05D009162 1.5e-44 183.7 245 44.1
BraA09t41463Z Brassica rapa HOM05D007250 ORTHO05D009162 1.5e-44 183.7 245 44.1
C08p44490 Brassica napus HOM05D007250 ORTHO05D009162 2.0e-44 183.3 207 47.3
Actinidia12769 Actinidia chinensis HOM05D007250 ORTHO05D000003 2.6e-44 183.0 210 45.2
Aa31LG7G990 Aethionema arabicum HOM05D007250 ORTHO05D009162 2.6e-44 183.0 240 43.3
Oeu034977.1 Olea europaea HOM05D007250 ORTHO05D009162 2.6e-44 183.0 226 45.1
Sopen10g001520 Solanum pennellii HOM05D007250 ORTHO05D009162 2.6e-44 183.0 203 47.8
CAN.G492.76 Capsicum annuum HOM05D007250 ORTHO05D009162 3.4e-44 182.6 203 47.8
Nitab4.5_0008957g0010 Nicotiana tabacum HOM05D007250 ORTHO05D009162 3.4e-44 182.6 219 45.7
Sp1g14600 Schrenkiella parvula HOM05D007250 ORTHO05D009162 5.8e-44 181.8 237 43.0
AT1G16445 Arabidopsis thaliana HOM05D007250 ORTHO05D009162 7.6e-44 181.4 237 42.2
FvH4_2g12161 Fragaria vesca HOM05D007250 ORTHO05D009162 7.6e-44 181.4 230 42.2
PGSC0003DMG400011276 Solanum tuberosum HOM05D007250 ORTHO05D009162 7.6e-44 181.4 276 40.2
QL04p088484 Quercus lobata HOM05D007250 ORTHO05D009162 1.0e-43 181.0 209 45.0
QL04p088943 Quercus lobata HOM05D007250 ORTHO05D009162 1.0e-43 181.0 209 45.0
AL1G28580 Arabidopsis lyrata HOM05D007250 ORTHO05D009162 1.7e-43 180.3 265 40.4
MD05G1040700 Malus domestica HOM05D007250 ORTHO05D009162 2.2e-43 179.9 242 43.0
Rhsim06G0242100 Rhododendron simsii HOM05D007250 ORTHO05D009162 2.2e-43 179.9 271 40.6
CARHR016920 Cardamine hirsuta HOM05D007250 ORTHO05D009162 1.1e-42 177.6 228 43.0
BolC8t51991H Brassica oleracea HOM05D007250 ORTHO05D009162 5.5e-42 175.3 217 45.2
Cpa.g.sc34.15 Carica papaya HOM05D007250 ORTHO05D009162 9.3e-42 174.5 114 68.4
AUR62018167 Chenopodium quinoa HOM05D007250 ORTHO05D009162 7.9e-41 171.4 247 40.9
COL.COLO4_32252 Corchorus olitorius HOM05D007250 ORTHO05D009162 1.8e-40 170.2 180 53.3
Os05g0511700 Oryza sativa ssp. japonica HOM05D007250 ORTHO05D009162 1.8e-40 170.2 204 44.1
Gohir.A13G123300 Gossypium hirsutum HOM05D007250 ORTHO05D009162 2.5e-39 166.4 274 38.0
Zm00001eb292510 Zea mays HOM05D007250 ORTHO05D009162 9.6e-39 164.5 205 42.0
TAR627G0140 Trochodendron aralioides HOM05D007250 ORTHO05D009162 1.6e-38 163.7 132 59.1
Atru.chr1.107 Acer truncatum HOM05D007250 ORTHO05D009162 6.3e-38 161.8 207 45.9
ATR0165G048 Amborella trichopoda HOM05D007250 ORTHO05D009162 6.3e-38 161.8 203 40.9
FAN20G1272 Fragaria x ananassa HOM05D007250 ORTHO05D009162 1.4e-37 160.6 149 53.7
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 3.1e-37 159.5 182 46.7
Prupe.8G055300 Prunus persica HOM05D007250 ORTHO05D009162 4.1e-37 159.1 118 63.6
MBI18_g10574_MAGBIO Magnolia biondii HOM05D007250 ORTHO05D009162 1.5e-36 157.1 182 47.3
HPP92_000965 Vanilla planifolia HOM05D007250 ORTHO05D009162 3.4e-36 156.0 207 41.1
arahy.Tifrunner.gnm1.ann1.3NS56Y Arachis hypogaea HOM05D007250 ORTHO05D009162 2.2e-35 153.3 124 61.3
CDE01G0022 Ceratophyllum demersum HOM05D007250 ORTHO05D009162 3.8e-35 152.5 203 39.9
Hund20100 Selenicereus undatus HOM05D007250 ORTHO05D009162 8.4e-35 151.4 113 61.9
AUR62042431 Chenopodium quinoa HOM05D007250 ORTHO05D009162 1.4e-34 150.6 192 41.7
Aqoxy6G01374 Aquilegia oxysepala HOM05D007250 ORTHO05D009162 7.2e-34 148.3 229 36.7
Psat1g013800 Pisum sativum HOM05D007250 ORTHO05D009162 5.7e-31 138.7 111 61.3
SGA_v2.0_scaffold7G03608 Striga asiatica HOM05D001395 ORTHO05D002039 2.8e-30 136.3 241 35.7
Hma1.2p1_0151F.1_g067320 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 1.3e-27 127.5 89 67.4
SMO141G0022 Selaginella moellendorffii HOM05D007250 ORTHO05D009162 1.1e-26 124.4 185 41.1
Pp3c16_19260 Physcomitrium patens HOM05D007250 ORTHO05D009162 1.9e-26 123.6 209 34.9
Mapoly0102s0005 Marchantia polymorpha HOM05D007250 ORTHO05D009162 9.4e-26 121.3 202 34.2
FAN24G3506 Fragaria x ananassa HOM05D007250 ORTHO05D009162 7.9e-25 118.2 96 58.3
AagrBONN_evm.TU.Sc2ySwM_117.37 Anthoceros agrestis HOM05D007250 ORTHO05D009162 1.7e-22 110.5 198 33.3
Migut.M01529 Erythranthe guttata HOM05D007250 ORTHO05D009162 1.7e-22 110.5 76 64.5
EL10Ac2g03263 Beta vulgaris HOM05D007250 ORTHO05D009162 1.0e-19 101.3 273 28.9
Sc10g0008800 Simmondsia chinensis HOM05D007250 ORTHO05D009162 5.0e-19 99.0 80 61.2
MCO03G414 Micromonas commoda HOM05D007250 ORTHO05D009162 1.0e-16 91.3 108 43.5
Hma1.2p1_0616F.1_g189960 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 6.7e-16 88.6 85 52.9
Cc05_g16330 Coffea canephora HOM05D007250 ORTHO05D009162 1.1e-15 87.8 141 39.7
QL03p068942 Quercus lobata HOM05D007250 ORTHO05D009162 4.8e-14 82.4 80 53.8
MELO3C019639.2 Cucumis melo HOM05D007250 ORTHO05D009162 1.5e-10 70.9 46 63.0
Mapoly0062s0100 Marchantia polymorpha HOM05D007250 ORTHO05D009162 1.9e-10 70.5 77 45.5
VMungo1080G0363 Vigna mungo HOM05D007250 ORTHO05D009162 1.2e-09 67.8 46 58.7
QL04p088027 Quercus lobata HOM05D037085 ORTHO05D009162 4.0e-08 62.8 53 50.9
Migut.M01530 Erythranthe guttata HOM05D007250 ORTHO05D009162 9.7e-07 58.2 110 32.7
CBR_g32272 Chara braunii HOM05D007250 ORTHO05D009162 3.7e-06 56.2 47 46.8
Cre12.g517550 Chlamydomonas reinhardtii HOM05D007250 ORTHO05D009162 6.3e-06 55.5 165 25.5


User provided reference genes

Program Settings