Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 5.8e-101 370.9 194 100.0
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 1.0e-76 290.4 197 80.2
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 1.7e-76 289.7 197 78.7
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 7.2e-75 284.3 198 75.8
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 2.1e-74 282.7 196 77.6
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 5.2e-73 278.1 197 77.2
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 4.4e-72 275.0 181 78.5
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 5.3e-70 268.1 182 74.7
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 7.0e-70 267.7 179 77.1
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 7.0e-70 267.7 197 75.1
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 2.7e-69 265.8 199 70.9
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 7.7e-69 264.2 181 76.8
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 1.3e-68 263.5 194 73.2
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 2.9e-68 262.3 199 71.4
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 8.5e-68 260.8 199 70.4
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 8.5e-68 260.8 176 75.0
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 8.5e-68 260.8 178 75.3
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 1.5e-67 260.0 199 72.4
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 3.2e-67 258.8 182 74.7
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 3.2e-67 258.8 177 74.6
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 3.2e-67 258.8 177 74.6
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 1.6e-66 256.5 189 73.0
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 2.7e-66 255.8 196 74.0
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 6.1e-66 254.6 181 74.0
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 1.0e-65 253.8 180 75.6
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 1.8e-65 253.1 185 73.0
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 1.8e-65 253.1 183 72.7
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 4.0e-65 251.9 183 72.1
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 4.0e-65 251.9 194 70.6
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 5.2e-65 251.5 193 70.5
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 5.2e-65 251.5 162 80.2
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 8.8e-65 250.8 190 70.5
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 8.8e-65 250.8 189 68.8
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 1.5e-64 250.0 185 74.1
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 2.6e-64 249.2 183 71.0
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 2.6e-64 249.2 199 69.3
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 5.7e-64 248.1 200 66.5
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 7.5e-64 247.7 169 74.6
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 9.8e-64 247.3 182 70.9
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 9.8e-64 247.3 183 69.9
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 1.7e-63 246.5 191 70.7
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 1.7e-63 246.5 183 71.0
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 2.8e-63 245.7 197 69.5
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 2.8e-63 245.7 197 66.5
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 4.8e-63 245.0 189 71.4
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 6.3e-63 244.6 197 66.5
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 8.3e-63 244.2 183 68.9
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 1.4e-62 243.4 184 70.1
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 2.4e-62 242.7 182 70.3
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 2.4e-62 242.7 194 68.6
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 3.1e-62 242.3 200 67.0
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 4.1e-62 241.9 193 67.4
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 5.4e-62 241.5 185 73.0
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.2e-61 240.4 199 66.3
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 2.0e-61 239.6 192 68.8
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 2.7e-61 239.2 194 68.0
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 3.5e-61 238.8 198 70.2
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 4.5e-61 238.4 196 67.9
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 5.9e-61 238.0 199 65.8
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 7.7e-61 237.7 179 72.1
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 7.7e-61 237.7 191 68.6
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 1.0e-60 237.3 181 70.7
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 1.0e-60 237.3 185 70.8
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 1.3e-60 236.9 218 62.8
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 1.7e-60 236.5 195 66.7
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 2.2e-60 236.1 202 68.3
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 2.2e-60 236.1 183 72.1
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 2.9e-60 235.7 196 66.3
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 2.9e-60 235.7 194 67.0
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 5.0e-60 235.0 182 68.1
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 6.5e-60 234.6 186 67.7
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 8.5e-60 234.2 198 69.2
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 1.1e-59 233.8 196 66.3
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 4.2e-59 231.9 192 68.2
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 1.4e-57 226.9 181 68.0
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 8.8e-57 224.2 194 64.9
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 1.5e-56 223.4 186 66.7
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 2.0e-56 223.0 190 65.8
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 3.4e-56 222.2 178 68.0
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 4.4e-56 221.9 178 69.1
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 5.7e-56 221.5 179 65.9
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 1.3e-55 220.3 181 66.3
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 1.7e-55 219.9 212 61.3
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 4.9e-55 218.4 189 64.6
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.1e-54 217.2 131 82.4
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.4e-54 216.9 169 69.2
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 4.1e-54 215.3 178 68.5
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 5.4e-54 214.9 176 65.3
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 7.0e-54 214.5 196 64.8
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 2.7e-53 212.6 238 52.9
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 4.5e-53 211.8 184 63.0
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 4.5e-53 211.8 179 65.9
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 2.5e-51 206.1 165 70.3
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 4.3e-51 205.3 168 64.3
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 1.6e-50 203.4 170 64.7
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 6.1e-50 201.4 195 60.5
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 2.3e-49 199.5 112 84.8
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 3.0e-49 199.1 194 60.8
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 1.5e-48 196.8 171 64.9
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 2.6e-48 196.1 113 82.3
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 3.4e-48 195.7 113 83.2
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 9.8e-48 194.1 113 81.4
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 1.4e-46 190.3 112 82.1
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 1.8e-46 189.9 113 80.5
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 5.4e-46 188.3 118 78.8
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 7.0e-46 188.0 148 68.9
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 2.0e-45 186.4 160 66.2
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.0e-44 184.1 152 63.8
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.7e-39 166.8 92 89.1
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.4e-38 163.7 92 88.0
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 4.1e-38 162.2 134 67.9
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 1.3e-36 157.1 162 54.3
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 1.5e-35 153.7 103 75.7
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 7.3e-35 151.4 88 81.8
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 3.6e-34 149.1 92 80.4
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 6.2e-34 148.3 110 65.5
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 4.4e-32 142.1 152 60.5
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 1.0e-28 131.0 128 53.1
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 1.3e-28 130.6 70 85.7
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.3e-28 130.6 100 61.0
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 3.9e-28 129.0 90 66.7
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 1.1e-27 127.5 97 61.9
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 7.3e-27 124.8 94 61.7
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 1.4e-25 120.6 70 75.7
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 1.7e-23 113.6 81 67.9
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 1.7e-23 113.6 122 50.8
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 1.5e-19 100.5 92 56.5
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 1.5e-08 63.9 98 35.7


User provided reference genes

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