Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 0.0e+00 1297.0 698 100.0
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.3e-270 936.4 678 70.6
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 5.3e-269 931.0 678 69.9
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 6.4e-267 924.1 678 69.2
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 1.9e-266 922.5 678 70.8
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 3.2e-266 921.8 697 68.6
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 5.6e-263 911.0 684 68.1
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 2.8e-262 908.7 677 69.3
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 4.0e-261 904.8 677 68.2
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.0e-261 903.7 677 68.4
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 5.8e-260 901.0 677 68.2
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 7.6e-260 900.6 678 68.4
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 3.8e-259 898.3 675 68.3
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 8.4e-259 897.1 679 68.2
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 1.1e-258 896.7 685 68.0
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 3.2e-258 895.2 678 68.0
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.2e-257 893.3 678 67.3
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.2e-257 893.3 678 67.3
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.8e-256 889.4 677 67.2
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 1.8e-256 889.4 678 67.0
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 3.0e-256 888.6 678 67.7
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 5.1e-256 887.9 678 67.3
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 6.7e-256 887.5 670 67.6
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.1e-255 886.7 678 68.9
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 1.1e-255 886.7 674 69.1
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.2e-254 882.5 678 66.4
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.8e-254 882.1 678 66.4
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 3.7e-254 881.7 678 66.4
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 6.3e-254 880.9 679 67.3
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 8.2e-254 880.6 678 68.9
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 1.1e-253 880.2 677 66.8
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 1.8e-253 879.4 678 68.7
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.8e-253 879.4 678 67.1
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 6.9e-253 877.5 678 67.7
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 1.3e-251 873.2 678 66.2
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 1.3e-251 873.2 678 66.5
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 1.1e-250 870.2 697 64.3
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 1.9e-250 869.4 678 66.7
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 3.2e-250 868.6 674 67.7
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 7.2e-250 867.5 678 65.5
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 9.4e-250 867.1 674 65.9
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 2.1e-249 865.9 678 66.4
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 6.1e-249 864.4 679 65.8
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 3.9e-248 861.7 678 66.5
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 6.7e-248 860.9 678 65.2
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.3e-247 858.6 678 64.6
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 5.7e-247 857.8 678 64.3
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 1.7e-246 856.3 646 68.3
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.2e-246 855.9 676 65.5
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.1e-245 853.6 670 66.3
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.4e-245 852.4 691 64.5
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 4.1e-245 851.7 678 65.2
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 9.1e-245 850.5 668 66.5
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 9.1e-245 850.5 679 64.7
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.2e-244 850.1 695 65.3
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 1.2e-244 850.1 663 67.3
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.4e-244 848.6 675 64.3
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 3.4e-244 848.6 668 66.3
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 7.7e-244 847.4 695 64.3
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-243 846.3 691 64.0
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 2.2e-243 845.9 668 66.2
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 3.8e-243 845.1 678 63.4
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 2.7e-241 839.0 674 63.6
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 4.7e-241 838.2 705 62.6
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.1e-240 834.7 728 62.1
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 8.8e-240 833.9 679 62.4
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 8.8e-240 833.9 678 64.3
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 9.7e-239 830.5 676 62.9
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 2.2e-238 829.3 676 64.2
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 2.4e-237 825.9 646 66.4
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 3.1e-237 825.5 678 62.7
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 3.1e-237 825.5 677 63.8
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 2.6e-236 822.4 677 64.3
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 1.0e-235 820.5 678 61.8
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 1.0e-235 820.5 677 63.8
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 1.3e-235 820.1 674 62.6
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.2e-235 819.3 676 61.8
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 2.9e-235 818.9 680 61.9
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 5.0e-235 818.1 676 62.4
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 6.5e-235 817.8 790 57.2
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 2.5e-234 815.8 695 61.7
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 4.2e-234 815.1 677 62.6
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 5.5e-234 814.7 668 63.6
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 7.2e-234 814.3 671 63.2
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-233 813.1 706 61.9
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 2.1e-233 812.8 676 64.2
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-231 806.6 707 61.7
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 2.0e-231 806.2 674 61.7
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 4.4e-231 805.1 674 61.7
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 4.4e-231 805.1 678 61.5
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.7e-230 803.1 677 62.0
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 8.2e-230 800.8 678 61.8
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.7e-227 793.1 673 59.9
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 3.8e-227 792.0 691 60.5
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.2e-225 786.9 672 59.8
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 1.6e-225 786.6 674 61.0
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 3.6e-225 785.4 679 61.3
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.4e-224 783.5 678 61.7
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 4.0e-224 781.9 673 59.7
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 5.2e-224 781.6 679 61.0
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 6.8e-224 781.2 652 63.2
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 5.7e-223 778.1 661 59.8
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 7.5e-223 777.7 697 60.3
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.1e-221 772.3 676 61.1
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.1e-221 772.3 608 65.1
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 9.1e-221 770.8 681 59.3
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.5e-218 763.5 645 60.2
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 2.5e-218 762.7 787 54.0
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 9.4e-218 760.8 636 61.3
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 9.4e-218 760.8 670 60.6
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.6e-217 760.0 676 60.5
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 3.6e-217 758.8 645 60.9
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 4.7e-217 758.4 636 61.2
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 8.0e-217 757.7 630 61.0
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 8.0e-217 757.7 669 59.2
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 3.0e-216 755.7 635 60.5
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 7.5e-215 751.1 701 56.5
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.2e-214 749.6 669 59.3
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 3.7e-214 748.8 676 59.3
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 5.4e-213 745.0 598 65.4
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 9.1e-213 744.2 644 60.1
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.2e-212 743.8 681 60.2
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.3e-211 740.3 640 62.0
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 8.6e-211 737.6 644 59.8
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 8.6e-211 737.6 644 59.8
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.4e-208 730.3 645 59.5
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 5.7e-207 724.9 676 56.7
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 1.7e-206 723.4 673 59.1
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 2.8e-206 722.6 611 62.7
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 2.1e-201 706.4 717 55.1
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 4.7e-201 705.3 605 60.5
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 1.4e-200 703.7 684 55.1
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.5e-196 689.1 671 55.3
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 8.9e-192 674.5 726 52.9
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 1.6e-177 627.1 651 52.4
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 6.4e-174 615.1 652 52.6
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 1.3e-171 607.4 546 59.7
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 6.9e-168 595.1 677 50.5
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 3.3e-162 576.2 523 57.0
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 7.2e-141 505.4 502 54.8
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 8.5e-134 481.9 682 42.1
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.8e-131 474.2 559 49.4
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 5.1e-131 472.6 432 58.6
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.2e-119 434.9 356 62.1
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 4.7e-108 396.4 361 56.8
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 2.7e-103 380.6 409 52.8
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.0e-102 376.3 337 58.5
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 7.5e-98 362.5 380 53.9
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 4.3e-93 346.7 300 58.0
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 1.0e-91 342.0 511 42.1
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.2e-90 338.6 310 59.0
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 7.8e-87 325.9 293 59.4
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 2.4e-80 304.3 419 44.4
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 3.4e-66 257.3 630 32.2
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 5.4e-64 250.0 385 43.6
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 7.8e-63 246.1 294 50.0
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.3e-56 222.6 156 71.8
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 7.8e-55 219.5 299 45.8
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 5.1e-54 216.9 634 28.2
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 6.4e-49 199.9 238 50.8
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.8e-43 181.8 210 50.0
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.2e-41 174.9 194 52.1
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 4.3e-37 160.6 184 49.5
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 3.7e-36 157.5 118 64.4
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 1.5e-34 152.1 96 79.2
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 5.5e-32 143.7 135 55.6
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 2.1e-31 141.7 172 47.7
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-27 129.4 163 47.2
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.9e-25 121.3 81 70.4
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 8.5e-25 119.8 79 72.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-24 118.2 80 70.0
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.5e-24 118.2 80 70.0
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.6e-23 114.0 209 35.9
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 2.4e-19 101.7 302 32.1
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 3.1e-19 101.3 68 76.5
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 5.0e-17 94.0 86 58.1
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 1.5e-13 82.4 103 42.7
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-12 79.0 115 40.0
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 1.1e-11 76.3 127 35.4
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 2.2e-09 68.6 174 32.2
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 9.4e-08 63.2 46 65.2
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.1e-07 60.5 118 35.6


User provided reference genes

Program Settings