Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 0.0e+00 1126.3 561 100.0
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 7.6e-202 707.6 553 66.9
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 5.5e-200 701.4 559 66.2
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.1e-192 677.2 563 64.1
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.1e-191 672.9 566 64.1
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.8e-190 669.8 565 63.5
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 6.7e-190 667.9 559 64.0
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 5.3e-187 658.3 565 63.7
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.4e-186 655.6 564 63.1
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.7e-185 653.3 556 62.8
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.2e-185 652.9 560 61.8
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.2e-184 649.0 558 63.4
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.2e-183 647.1 566 62.7
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 7.9e-183 644.4 561 63.1
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.4e-182 643.7 559 61.4
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 2.3e-182 642.9 560 61.6
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.4e-179 632.9 554 62.3
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 5.3e-179 631.7 561 63.1
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 5.3e-179 631.7 578 60.6
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 6.9e-179 631.3 569 62.0
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 4.5e-178 628.6 558 60.9
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.3e-177 627.1 560 61.2
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 3.6e-175 619.0 553 60.4
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 4.7e-175 618.6 561 59.2
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 3.9e-174 615.5 562 60.1
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 4.4e-173 612.1 559 60.5
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.4e-171 607.1 561 59.9
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.8e-171 606.7 555 60.2
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 2.4e-171 606.3 565 58.6
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 3.1e-171 605.9 531 60.3
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.1e-171 605.9 555 60.0
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 7.0e-171 604.7 568 57.9
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 7.0e-171 604.7 556 60.1
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 7.0e-171 604.7 546 60.6
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 9.1e-171 604.4 558 58.1
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.2e-170 604.0 559 59.4
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.2e-170 604.0 567 58.7
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.6e-170 603.6 559 59.0
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 2.0e-170 603.2 566 59.0
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 2.0e-170 603.2 558 57.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.6e-170 602.8 566 59.7
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 3.5e-170 602.4 556 59.2
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 4.5e-170 602.1 565 58.6
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.0e-169 600.9 567 58.2
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.0e-169 600.9 563 58.3
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.3e-169 600.5 573 57.2
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.3e-169 600.5 560 58.9
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.7e-169 600.1 566 58.5
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 3.8e-169 599.0 553 58.8
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 6.5e-169 598.2 555 58.7
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 1.1e-168 597.4 559 57.4
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.9e-168 596.7 553 59.0
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.9e-168 596.7 560 58.2
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 3.2e-168 595.9 562 58.4
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 9.4e-168 594.3 563 57.9
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 2.1e-167 593.2 559 58.7
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 3.6e-167 592.4 563 57.7
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 3.6e-167 592.4 558 59.0
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 6.1e-167 591.7 568 57.9
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 8.0e-167 591.3 564 56.9
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 3.0e-166 589.3 564 58.5
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 6.7e-166 588.2 559 59.4
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 2.6e-165 586.3 575 55.7
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.4e-165 585.5 574 57.1
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 5.7e-165 585.1 564 57.4
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.3e-164 583.9 566 57.6
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.2e-164 583.2 564 56.2
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 3.7e-164 582.4 567 57.7
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.1e-163 579.3 615 53.0
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 5.9e-162 575.1 551 57.2
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.0e-161 574.3 575 56.0
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.8e-161 572.4 564 54.6
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 3.8e-161 572.4 559 56.0
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 3.8e-161 572.4 563 57.0
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 5.0e-161 572.0 569 57.6
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.5e-160 569.7 554 56.3
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 4.7e-159 565.5 563 55.2
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.8e-158 563.5 558 56.3
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 1.8e-158 563.5 575 56.0
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 5.2e-158 562.0 564 57.3
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.0e-157 560.1 494 63.6
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.6e-157 559.7 582 54.3
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 2.6e-157 559.7 556 55.2
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 2.6e-157 559.7 562 54.3
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 3.5e-154 549.3 500 59.4
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 5.9e-154 548.5 559 56.4
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.3e-153 547.4 566 55.8
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.7e-153 547.0 505 58.2
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 1.5e-152 543.9 554 56.1
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.4e-150 537.3 563 55.2
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.0e-150 536.2 558 53.8
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.2e-149 534.3 586 52.9
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 3.7e-148 529.3 634 50.9
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 8.3e-148 528.1 532 56.6
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 3.1e-147 526.2 504 56.3
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 2.7e-146 523.1 474 58.0
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 6.6e-145 518.5 594 50.3
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 8.6e-145 518.1 616 48.9
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.1e-144 517.7 534 54.7
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 3.6e-143 512.7 569 53.8
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 5.2e-142 508.8 505 56.0
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 5.7e-141 505.4 560 53.0
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 3.7e-140 502.7 483 55.3
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 1.8e-139 500.4 508 56.1
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.8e-139 500.4 565 50.1
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 3.2e-139 499.6 557 49.2
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.7e-138 496.5 566 53.4
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 2.7e-138 496.5 565 51.0
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.9e-137 492.7 549 51.4
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 5.0e-137 492.3 531 52.9
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 2.1e-135 486.9 573 49.2
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 6.8e-134 481.9 531 51.0
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.4e-131 474.2 465 58.1
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 3.6e-127 459.5 499 50.9
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.5e-125 454.1 457 55.6
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 8.3e-124 448.4 561 47.1
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.8e-119 433.3 556 46.2
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 1.2e-117 427.9 521 49.3
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.7e-114 416.8 559 44.5
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 6.6e-113 412.1 468 52.4
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 3.3e-112 409.8 324 64.5
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.2e-111 407.9 586 42.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.2e-111 407.9 586 42.3
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.9e-110 402.1 582 41.6
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 5.8e-109 399.1 334 62.9
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.7e-106 390.2 604 40.9
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.5e-104 384.4 540 42.4
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 4.5e-101 372.9 521 44.1
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 8.4e-92 342.0 579 39.2
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.9e-91 340.9 475 46.5
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 4.6e-90 336.3 352 50.9
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.1e-79 300.8 703 32.3
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.9e-75 287.7 600 34.2
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.2e-75 285.8 181 71.8
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.6e-74 284.6 612 33.8
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 3.4e-69 266.9 166 73.5
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 2.9e-68 263.8 410 42.9
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 8.5e-68 262.3 476 39.3
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 3.5e-53 213.8 264 51.1
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 2.1e-50 204.5 199 51.8
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.4e-46 191.8 198 57.6
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 4.1e-46 190.3 162 65.4
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.5e-37 160.2 293 38.2
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.9e-36 157.5 156 60.9
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.1e-35 155.6 99 66.7
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.6e-34 151.8 177 52.0
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.6e-34 151.8 141 61.7
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.0e-32 144.8 160 52.5
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.4e-30 138.7 94 70.2
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.8e-28 130.6 143 49.0
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 3.4e-24 117.5 170 35.9
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 3.7e-23 114.0 180 35.0
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.3e-20 104.8 68 66.2
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.5e-16 92.0 102 47.1
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 4.6e-13 80.5 99 47.5
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 8.9e-09 66.2 39 74.4


User provided reference genes

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