Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 0.0e+00 1199.5 647 100.0
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.5e-281 971.8 644 74.2
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 9.8e-278 959.9 652 73.2
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 2.2e-277 958.7 646 77.1
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.4e-276 956.1 642 73.4
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 4.6e-275 951.0 652 72.5
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 7.8e-275 950.3 642 73.2
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.3e-274 948.7 642 73.1
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 8.6e-274 946.8 643 72.2
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 2.8e-272 941.8 616 74.5
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 1.1e-271 939.9 645 72.2
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 5.8e-270 934.1 650 74.0
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 2.2e-269 932.2 641 71.8
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 7.1e-268 927.2 642 72.0
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.1e-267 925.6 607 75.6
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 2.1e-267 925.6 556 79.3
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.7e-267 925.2 599 74.8
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 3.5e-267 924.9 599 75.8
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.3e-266 922.2 645 76.3
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 5.1e-266 921.0 645 73.0
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 6.6e-266 920.6 644 70.0
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.5e-265 919.5 644 70.0
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 3.3e-265 918.3 600 74.5
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 9.5e-265 916.8 547 80.4
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.6e-264 916.0 644 70.5
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 3.6e-264 914.8 547 79.3
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 4.0e-263 911.4 559 77.5
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 7.6e-262 907.1 548 78.5
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 6.4e-261 904.0 557 76.8
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.4e-260 902.9 653 69.7
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.9e-260 902.5 645 70.9
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 1.2e-259 899.8 652 69.2
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 2.7e-259 898.7 559 76.4
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 3.5e-259 898.3 652 69.5
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.8e-259 897.1 652 68.6
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.0e-258 896.7 652 69.3
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.3e-258 896.3 559 76.4
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.7e-258 896.0 652 69.5
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.3e-258 895.6 652 70.4
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.9e-257 892.5 547 77.7
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 7.3e-257 890.6 545 79.1
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.1e-256 889.0 645 67.8
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 4.7e-256 887.9 645 67.8
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 2.4e-255 885.6 647 70.6
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 6.9e-255 884.0 556 75.2
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.2e-254 883.2 545 75.2
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 3.4e-254 881.7 559 75.7
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 5.8e-254 880.9 652 69.5
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 2.2e-253 879.0 635 73.2
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.9e-253 878.6 648 72.7
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 8.4e-253 877.1 644 66.9
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 3.2e-252 875.2 651 69.1
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 5.4e-252 874.4 553 76.1
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 5.4e-252 874.4 553 76.1
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.3e-250 869.8 558 75.3
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 3.0e-250 868.6 547 76.1
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.9e-250 868.2 549 76.0
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 5.1e-250 867.8 547 76.1
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 5.6e-249 864.4 533 77.5
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 7.3e-249 864.0 524 78.4
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.6e-248 861.7 549 76.0
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 2.4e-247 859.0 555 74.8
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 2.4e-247 859.0 653 66.9
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 2.0e-246 855.9 561 73.4
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.6e-246 855.5 657 66.4
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 2.6e-246 855.5 657 66.4
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.7e-243 845.5 603 68.5
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.0e-242 843.6 537 75.8
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.3e-242 843.2 560 73.0
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.9e-241 839.3 552 74.3
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 2.5e-241 839.0 546 73.4
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 2.5e-241 839.0 564 73.0
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 2.1e-240 835.9 561 72.2
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 6.2e-240 834.3 546 73.1
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-239 833.2 661 65.2
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 1.5e-238 829.7 560 72.7
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 2.0e-238 829.3 561 73.1
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.6e-238 828.9 654 65.3
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 2.6e-238 828.9 578 72.1
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 5.8e-238 827.8 553 72.2
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.2e-237 825.9 654 65.4
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 8.4e-237 823.9 572 71.5
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 3.2e-236 822.0 663 64.9
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 3.2e-236 822.0 663 64.9
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 3.2e-236 822.0 663 64.9
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.2e-235 820.1 545 71.9
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 4.6e-235 818.1 565 69.4
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 5.1e-234 814.7 543 72.0
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 5.6e-233 811.2 543 71.6
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 7.4e-233 810.8 543 71.8
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.6e-232 809.7 549 70.5
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 8.2e-232 807.4 543 71.5
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.8e-231 806.2 580 67.6
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.5e-230 803.1 553 69.1
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.2e-227 793.5 552 69.9
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.1e-227 792.7 549 69.4
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.8e-226 789.6 549 68.9
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 2.3e-226 789.3 553 69.1
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.3e-225 785.4 526 72.1
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 4.3e-225 785.0 553 68.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 3.4e-222 775.4 495 74.9
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 6.5e-221 771.2 516 73.3
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.4e-218 763.5 569 66.4
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-218 763.5 649 62.1
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.3e-218 762.7 658 58.7
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 5.1e-218 761.5 649 61.9
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 5.1e-218 761.5 649 61.9
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 2.2e-213 746.1 636 62.1
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.2e-213 746.1 564 64.7
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 9.4e-212 740.7 547 71.1
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 9.7e-209 730.7 633 61.1
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.3e-208 730.3 530 68.7
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 2.2e-208 729.6 562 64.4
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.6e-206 722.6 647 62.1
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 1.7e-205 719.9 555 64.7
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 7.0e-199 698.0 562 62.1
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 1.9e-196 689.9 555 62.9
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 2.2e-189 666.4 574 61.8
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 2.7e-187 659.4 559 61.7
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 8.0e-179 631.3 547 59.8
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 8.0e-179 631.3 551 57.9
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.1e-175 620.9 585 57.4
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.3e-173 614.0 429 68.1
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 9.5e-172 607.8 407 74.0
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.2e-166 590.9 453 66.0
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 2.1e-158 563.5 333 79.3
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.6e-155 553.9 558 53.8
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 6.4e-152 542.0 314 82.5
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.4e-151 540.8 553 52.4
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.6e-123 447.6 382 57.1
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.8e-123 446.8 385 56.9
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 7.4e-116 422.2 282 69.9
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 5.5e-95 352.8 352 56.8
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 3.8e-80 303.5 565 34.3
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.9e-79 301.2 646 37.6
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 9.4e-79 298.9 389 46.8
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 2.4e-58 231.1 220 52.3
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.0e-48 199.1 166 61.4
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 9.2e-42 176.0 152 55.9
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 3.3e-31 141.0 310 31.0
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 2.4e-26 124.8 77 77.9
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.7e-25 121.3 90 65.6
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 5.1e-24 117.1 99 61.6
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 7.3e-23 113.2 101 56.4
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 5.1e-16 90.5 60 70.0
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 7.9e-09 66.6 58 58.6
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 3.9e-08 64.3 40 72.5
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 1.5e-07 62.4 43 67.4


User provided reference genes

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