Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 2471.4 1230 100.0
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 2067.7 1262 81.9
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2052.7 1256 80.6
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2030.0 1260 79.7
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2026.1 1267 79.1
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2020.0 1261 79.1
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2018.8 1263 79.2
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2017.7 1261 79.3
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 2017.3 1249 79.3
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2016.1 1260 79.0
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2014.6 1248 79.5
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2012.3 1260 78.4
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2010.7 1260 78.8
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2007.6 1260 79.4
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1998.0 1259 78.2
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1998.0 1260 78.3
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1996.5 1259 78.1
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1993.4 1256 77.9
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1990.7 1259 77.5
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1987.6 1256 77.8
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1984.9 1252 78.5
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1977.2 1259 77.3
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1975.3 1268 77.5
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1973.0 1254 77.2
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1972.2 1252 78.1
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1971.4 1252 78.0
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1970.3 1252 78.0
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1968.0 1301 74.8
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1967.6 1252 77.9
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1962.2 1259 76.3
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1960.3 1253 77.6
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1958.7 1257 77.2
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1949.1 1263 75.8
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1948.7 1254 76.8
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1947.2 1263 75.7
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1941.8 1247 76.8
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1937.2 1258 75.8
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1936.8 1255 76.5
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1936.8 1282 74.9
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1931.8 1257 76.7
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1927.1 1253 75.7
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1920.6 1250 77.2
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1917.1 1287 74.0
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1916.0 1256 75.6
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1913.7 1256 74.8
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1913.3 1261 74.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1910.6 1254 75.8
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1908.6 1258 75.0
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1907.5 1257 74.5
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1906.7 1260 74.6
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1905.6 1518 66.1
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1903.6 1257 73.9
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1897.9 1258 74.4
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1897.5 1320 71.7
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1897.5 1272 74.2
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1895.2 1257 74.6
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1894.4 1259 74.2
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1893.6 1260 74.4
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1883.6 1283 73.3
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1880.5 1262 73.7
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1880.5 1262 73.5
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1880.5 1239 75.0
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1879.0 1262 73.6
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1879.0 1243 74.5
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1878.2 1249 75.1
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1877.1 1254 74.3
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1875.9 1248 75.0
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1874.8 1254 74.0
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1262 73.3
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1874.0 1268 73.3
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1873.2 1263 73.5
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1871.3 1261 73.4
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1870.9 1258 73.1
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1870.1 1257 75.0
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1865.9 1269 72.1
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1864.7 1253 73.3
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1858.2 1253 73.2
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1856.6 1261 73.1
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1855.1 1261 72.8
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1854.0 1261 72.6
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1849.3 1262 72.6
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1848.2 1265 73.0
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1847.8 1255 73.3
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1845.5 1262 72.6
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1843.9 1227 74.5
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1833.9 1272 73.6
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1805.0 1157 76.0
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1796.6 1308 69.3
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1774.6 1225 72.2
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1767.7 1252 69.4
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1756.1 1247 70.4
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1754.6 1159 74.6
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1651.7 1073 75.5
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1622.1 1090 73.6
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1616.7 1205 66.9
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1609.0 1237 64.7
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1596.3 999 79.2
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1593.9 1034 76.7
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1569.3 1039 75.6
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1553.9 1062 73.5
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1511.9 1032 72.6
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1453.0 1016 72.0
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1450.3 1086 69.1
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1432.2 924 77.4
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1394.4 856 79.6
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1298.5 1391 50.5
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1199.9 1357 47.8
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1195.6 1256 53.4
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1135.6 753 74.1
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1133.6 742 74.1
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1080.9 856 64.1
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 9.2e-301 1037.3 1005 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 9.2e-293 1010.7 1160 46.8
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 4.3e-266 922.2 592 78.2
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 3.3e-250 869.4 858 56.2
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.6e-249 867.1 536 78.2
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 6.3e-209 732.3 446 80.0
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 3.6e-204 716.5 1434 33.3
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 5.2e-179 632.9 454 70.3
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.7e-161 574.7 489 60.5
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 8.1e-156 555.8 306 86.3
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 3.8e-121 440.7 314 69.1
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 2.0e-101 375.2 205 86.8
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.2e-92 345.1 194 82.5
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.8e-92 344.7 316 59.2
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 6.3e-92 343.6 372 48.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 8.0e-87 326.6 256 62.9
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 2.5e-80 305.1 172 83.1
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 8.0e-79 300.1 159 91.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.2e-77 296.2 234 67.5
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.9e-75 288.9 230 67.0
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 3.6e-71 274.6 152 85.5
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.6e-69 268.5 262 52.3
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 9.9e-69 266.5 254 55.9
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 9.9e-69 266.5 254 55.9
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 9.9e-69 266.5 254 55.9
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.0e-65 256.5 436 34.9
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.7e-65 255.8 180 66.1
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 2.1e-63 248.8 201 62.7
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.9e-56 225.7 143 79.7
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 9.6e-56 223.4 148 73.6
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 6.9e-54 217.2 132 75.0
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.9e-49 201.4 140 69.3
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.8e-47 194.5 143 65.7
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 5.3e-46 191.0 210 50.5
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.9e-42 177.2 109 77.1
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.0e-41 175.3 121 72.7
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 1.9e-40 172.6 126 66.7
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 2.5e-40 172.2 111 73.9
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.5e-40 172.2 98 79.6
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.5e-40 172.2 109 74.3
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.3e-40 171.8 109 74.3
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.3e-40 171.8 109 74.3
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 6.9e-38 164.1 109 73.4
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-36 159.8 102 75.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.1e-35 156.8 98 81.6
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 6.7e-33 147.5 81 79.0
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.2e-31 140.6 78 78.2
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.1e-30 140.2 124 60.5
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 6.7e-25 120.9 87 65.5
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 5.7e-24 117.9 65 80.0
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 2.4e-22 112.5 104 60.6
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 1.5e-21 109.8 107 47.7
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.1e-19 103.6 62 79.0
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 3.2e-19 102.1 57 80.7
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.6e-18 99.8 834 21.7
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.0e-17 95.5 52 80.8
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 4.8e-15 88.2 81 56.8
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 2.4e-14 85.9 75 60.0
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 1.3e-12 80.1 50 74.0
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 6.5e-12 77.8 99 45.5
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 3.2e-11 75.5 69 47.8
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 2.6e-08 65.9 107 34.6
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.1e-06 60.5 52 59.6


User provided reference genes

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