Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 3.7e-211 738.0 397 100.0
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.6e-36 157.9 433 32.6
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.8e-35 154.5 412 34.0
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 6.7e-35 152.5 419 37.9
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 2.5e-34 150.6 430 32.8
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 4.3e-34 149.8 426 35.0
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 1.1e-32 145.2 432 32.6
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 2.4e-32 144.1 408 33.1
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 3.1e-32 143.7 419 32.5
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 9.0e-32 142.1 449 32.5
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.2e-31 141.7 448 33.3
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 3.0e-27 127.1 450 31.6
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 5.1e-27 126.3 435 31.3
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 5.1e-27 126.3 428 31.1
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.1e-26 125.2 408 32.6
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 1.1e-26 125.2 416 29.8
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.5e-26 124.8 428 31.8
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.5e-26 124.8 406 32.5
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 3.3e-26 123.6 432 30.6
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.3e-26 123.2 425 29.4
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 5.7e-26 122.9 398 32.4
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 5.7e-26 122.9 406 32.5
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 5.7e-26 122.9 424 27.6
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 1.3e-25 121.7 383 31.9
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 4.8e-25 119.8 309 32.7
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.3e-25 119.4 429 29.8
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 8.2e-25 119.0 396 30.1
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 8.2e-25 119.0 416 31.2
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.1e-24 118.6 433 29.1
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.1e-24 118.6 427 29.5
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.8e-24 117.9 389 29.8
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 9.1e-24 115.5 409 31.8
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.0e-23 114.4 396 29.8
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 3.4e-23 113.6 452 28.3
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.0e-22 112.1 390 29.7
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.2e-22 110.9 429 30.1
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 2.9e-22 110.5 438 29.7
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 2.9e-22 110.5 414 31.2
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 6.5e-22 109.4 438 29.5
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 1.1e-21 108.6 440 28.0
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 1.1e-21 108.6 290 36.6
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 1.0e-19 102.1 434 28.6
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 1.8e-19 101.3 443 29.1
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.9e-19 100.1 341 31.7
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 5.1e-19 99.8 432 28.7
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.0e-18 97.8 469 27.5
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.0e-18 97.8 452 27.2
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 2.0e-18 97.8 403 29.8
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.4e-18 96.7 428 29.9
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.7e-17 94.7 443 26.0
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 1.7e-17 94.7 444 28.8
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 2.2e-17 94.4 442 26.9
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 3.7e-17 93.6 450 26.4
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 3.7e-17 93.6 140 40.7
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 6.3e-17 92.8 431 26.9
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.1e-16 92.0 419 27.9
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.8e-16 91.3 433 26.8
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.8e-16 91.3 397 27.0
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 2.4e-16 90.9 134 41.8
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 7.0e-16 89.4 426 27.2
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.0e-15 87.8 408 28.4
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 4.5e-15 86.7 437 26.5
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 4.5e-15 86.7 399 26.3
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 5.9e-15 86.3 404 27.2
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.3e-14 85.1 396 27.8
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 1.7e-14 84.7 445 26.3
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.9e-14 84.0 398 26.9
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 3.8e-14 83.6 337 29.4
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.0e-14 83.2 396 27.3
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 6.5e-14 82.8 429 26.6
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 6.5e-14 82.8 433 24.9
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 8.5e-14 82.4 129 41.9
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.1e-13 82.0 399 27.6
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 1.1e-13 82.0 246 30.9
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.1e-13 82.0 397 27.2
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 1.1e-13 82.0 405 24.2
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.1e-13 82.0 435 25.7
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.9e-13 81.3 429 25.9
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.9e-13 81.3 401 26.2
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.9e-13 81.3 217 30.0
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.9e-13 81.3 217 30.0
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 3.2e-13 80.5 421 29.5
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 4.2e-13 80.1 435 27.4
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 7.2e-13 79.3 429 25.9
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 1.6e-12 78.2 437 24.3
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 1.6e-12 78.2 410 25.4
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.1e-12 77.8 409 27.6
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 2.1e-12 77.8 273 31.1
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 2.1e-12 77.8 360 28.1
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.7e-12 77.4 414 25.6
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 2.7e-12 77.4 127 39.4
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 2.7e-12 77.4 361 27.4
BolC2t06018H Brassica oleracea HOM05D013727 ORTHO05D003520 4.7e-12 76.6 168 33.9
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 6.1e-12 76.3 298 30.2
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 6.1e-12 76.3 409 27.4
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 8.0e-12 75.9 312 25.6
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 1.0e-11 75.5 413 26.2
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.0e-11 75.5 441 24.3
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.0e-11 75.5 404 26.0
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 1.4e-11 75.1 413 27.1
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 1.4e-11 75.1 417 25.7
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.8e-11 74.7 422 26.1
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.3e-11 74.3 398 25.6
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.3e-11 74.3 444 26.1
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 3.0e-11 73.9 402 26.4
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 4.0e-11 73.6 435 24.8
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 6.7e-11 72.8 398 27.1
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 8.8e-11 72.4 408 25.5
Aa31LG1G23030 Aethionema arabicum HOM05D013727 ORTHO05D003520 1.5e-10 71.6 427 25.8
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 1.5e-10 71.6 398 24.6
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.5e-10 71.6 429 23.3
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.0e-10 71.2 410 27.6
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 2.0e-10 71.2 408 24.8
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 3.3e-10 70.5 129 34.9
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 3.3e-10 70.5 385 24.4
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 4.4e-10 70.1 132 37.1
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 5.7e-10 69.7 395 25.1
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 5.7e-10 69.7 423 22.9
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 9.7e-10 68.9 423 23.4
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 9.7e-10 68.9 389 22.6
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 3.7e-09 67.0 414 25.8
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 4.8e-09 66.6 421 23.8
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 6.3e-09 66.2 458 24.9
Carub.0006s0045 Capsella rubella HOM05D013727 ORTHO05D003520 8.2e-09 65.9 435 25.1
Thhalv10016075m.g Eutrema salsugineum HOM05D013727 ORTHO05D003520 8.2e-09 65.9 432 25.0
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 8.2e-09 65.9 408 23.5
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 1.8e-08 64.7 337 27.9
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.4e-08 64.3 401 23.7
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 3.1e-08 63.9 449 22.9
AL6G10750 Arabidopsis lyrata HOM05D013727 ORTHO05D003520 7.0e-08 62.8 429 24.0
AT5G01370 Arabidopsis thaliana HOM05D013727 ORTHO05D003520 7.0e-08 62.8 435 23.7
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 9.1e-08 62.4 314 27.4
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 9.1e-08 62.4 445 25.4
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.2e-07 62.0 213 28.6
Sp6g40680 Schrenkiella parvula HOM05D013727 ORTHO05D003520 1.2e-07 62.0 152 30.9
BraA02t04692Z Brassica rapa HOM05D013727 ORTHO05D003520 1.6e-07 61.6 146 30.8
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 1.6e-07 61.6 455 25.1
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.6e-07 61.6 401 23.7
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.0e-07 61.2 420 26.7
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 2.0e-07 61.2 394 25.4
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 3.5e-07 60.5 404 24.5
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 3.5e-07 60.5 390 24.6
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 3.5e-07 60.5 151 28.5
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 7.7e-07 59.3 430 24.2
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 1.3e-06 58.5 290 27.2
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 2.2e-06 57.8 412 22.6
CARHR211750 Cardamine hirsuta HOM05D013727 ORTHO05D003520 2.2e-06 57.8 434 26.0
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 2.2e-06 57.8 412 23.5
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 2.2e-06 57.8 120 30.8
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 2.2e-06 57.8 303 25.7
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.9e-06 57.4 274 25.2
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 8.5e-06 55.8 424 22.2


User provided reference genes

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