Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 4232.6 2342 100.0
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1909.8 2474 53.3
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1886.7 2551 52.8
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1876.7 2520 53.1
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1860.9 2554 51.3
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1830.5 2523 51.2
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1793.5 2502 50.9
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1787.7 2527 50.8
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1779.2 2525 50.7
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1773.4 2542 49.8
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1761.1 2504 51.0
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1749.6 2525 50.1
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1747.3 2508 49.9
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1745.7 2557 49.2
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1729.5 2508 48.9
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1726.5 2517 48.8
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1715.7 2527 50.2
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1714.9 2502 51.4
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1701.4 2508 48.6
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1694.9 2563 49.2
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1689.9 2570 49.0
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1686.4 2558 49.1
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1684.5 2517 49.2
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1678.7 2513 50.1
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1673.3 2540 49.5
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1673.3 2565 48.5
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1619.0 2487 48.8
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1618.2 2510 48.6
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1617.4 2518 47.1
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1612.0 2471 48.4
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1611.7 2492 49.4
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1610.5 2484 48.5
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1597.8 2516 47.0
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1595.5 2515 46.9
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1595.5 2502 49.0
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1581.2 2565 46.6
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1563.5 2511 47.9
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1560.0 2534 47.6
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1550.4 2489 47.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1541.6 2487 47.5
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1540.4 2532 47.3
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1524.6 2564 47.1
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1520.8 2485 47.3
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1519.6 2526 46.2
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1516.9 2495 47.1
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1516.5 2530 46.0
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1505.3 2180 50.6
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1502.3 2483 46.7
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1491.5 2532 45.5
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1491.5 2320 49.1
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1468.4 2463 46.1
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1466.8 2545 45.8
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1461.8 2503 47.3
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1453.7 2411 46.5
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1449.5 2511 45.5
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1446.8 2481 45.2
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1446.0 2541 43.7
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1402.1 2479 45.2
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1400.2 2512 44.1
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1394.8 2514 44.1
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1392.9 2544 44.6
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1383.2 2489 45.4
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1382.1 2496 45.8
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1379.8 2385 44.9
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1373.2 2480 44.4
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1371.7 2453 45.6
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1361.7 2513 43.2
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1361.7 2044 49.7
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1360.5 2641 43.1
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1353.2 2475 44.7
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1337.4 2557 42.8
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1337.4 2498 43.8
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1334.7 2506 44.3
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1330.9 2486 43.1
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1328.5 2341 44.7
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1291.6 1883 50.7
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1263.4 2386 43.4
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1261.5 2454 44.4
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1255.7 2501 42.9
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1245.7 2471 43.0
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1243.4 2485 42.9
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1215.3 2520 42.1
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1196.0 2470 42.9
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1186.8 2453 41.4
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1131.3 2459 39.4
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1129.4 2472 38.4
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1129.0 2365 39.0
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1120.5 2435 42.5
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1114.8 2331 41.6
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1109.4 2415 40.1
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1107.8 2434 39.2
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1092.4 2385 41.8
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1087.8 2385 41.6
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1082.8 2456 41.1
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 1.7e-308 1063.9 2305 39.7
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 7.6e-304 1048.5 2515 37.3
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 7.4e-299 1031.9 2490 38.4
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 3.6e-285 986.5 2359 38.0
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.3e-284 984.6 1676 47.3
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 3.7e-282 976.5 2332 39.3
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 8.2e-258 895.6 2447 37.6
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.3e-242 845.1 1281 46.4
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.1e-230 805.4 1079 53.8
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 2.5e-230 804.3 2344 37.1
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 3.7e-226 790.4 969 51.8
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 3.9e-223 780.4 2326 36.5
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 3.9e-223 780.4 2326 36.5
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.5e-222 777.7 1736 39.0
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 6.2e-221 773.1 2494 36.1
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.3e-218 765.4 2366 36.0
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 1.4e-217 761.9 2339 36.7
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 3.0e-215 754.2 2344 36.6
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 6.2e-189 666.8 1014 50.1
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.1e-182 646.0 2566 32.8
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.2e-165 588.6 719 53.7
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.7e-160 571.6 2372 31.7
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.3e-157 562.8 943 49.0
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.8e-157 561.6 970 45.7
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.5e-137 495.4 1894 34.4
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 6.1e-136 490.7 585 55.4
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.6e-134 485.3 1752 31.1
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 2.0e-110 406.0 501 48.7
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.6e-107 396.4 789 39.8
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.1e-95 357.1 1618 32.6
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 3.1e-95 355.5 453 48.3
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.0e-90 340.5 668 41.0
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 5.2e-87 328.2 1097 31.9
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 1.3e-85 323.6 925 33.4
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 4.3e-81 308.5 1314 33.6
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.9e-68 266.5 2742 26.5
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.0e-61 244.2 301 49.5
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 5.3e-55 221.9 976 30.4
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.4e-50 207.2 1000 32.7
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.9e-50 205.7 2658 27.4
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.2e-46 194.1 250 49.6
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 2.0e-46 193.4 345 40.9
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 8.5e-45 188.0 250 48.8
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 1.5e-41 177.2 517 34.8
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.9e-37 162.9 2617 26.1
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 2.5e-36 159.8 361 35.2
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.3e-34 153.3 496 33.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.7e-32 146.0 2582 25.9
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 6.3e-32 145.2 2313 25.4
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 6.3e-24 118.6 318 35.2
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.6e-17 96.7 244 36.1
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 6.3e-16 92.0 237 35.9
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 7.7e-14 85.1 283 31.1
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.7e-13 84.0 118 50.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.5e-12 80.9 147 38.1
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 1.9e-12 80.5 2116 26.3
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 1.9e-12 80.5 62 64.5
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.5e-12 80.1 101 48.5
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 4.2e-12 79.3 61 63.9
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 7.2e-12 78.6 196 32.7
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 8.0e-11 75.1 187 32.1
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 2.2e-08 67.0 84 47.6
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 3.7e-08 66.2 71 54.9


User provided reference genes

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