Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 0.0e+00 2034.2 1019 100.0
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 2.4e-302 1042.3 1017 51.1
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 3.9e-297 1025.0 1009 51.6
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 6.3e-295 1017.7 1025 50.7
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 4.6e-290 1001.5 1040 50.9
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 2.8e-287 992.3 979 51.6
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 6.9e-286 987.6 1017 50.8
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 9.1e-286 987.3 1016 51.1
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 2.6e-285 985.7 1023 50.9
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 2.6e-280 969.1 1033 48.9
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.5e-275 952.6 982 49.6
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 6.1e-274 948.0 1016 49.5
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 1.8e-270 936.4 1021 49.0
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.6e-269 932.6 982 48.9
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.5e-267 926.8 1017 48.5
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 4.2e-267 925.2 1021 48.7
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 6.1e-266 921.4 1017 49.0
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.3e-265 919.5 1021 48.4
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.6e-261 906.7 1013 48.4
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 5.9e-261 904.8 1014 48.5
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 2.9e-260 902.5 1014 46.9
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 2.5e-259 899.4 1019 46.4
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 3.4e-256 889.0 1010 46.2
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 5.4e-254 881.7 1010 46.6
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 7.7e-253 877.9 999 46.3
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 7.7e-253 877.9 1020 45.1
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 1.5e-248 863.6 1018 46.5
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 1.5e-248 863.6 1007 45.6
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 1.2e-245 854.0 1017 45.4
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 8.6e-244 847.8 841 50.9
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 1.1e-243 847.4 1022 45.1
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.4e-241 840.5 1000 45.2
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 1.2e-240 837.4 1018 44.1
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 2.0e-240 836.6 1018 45.4
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 2.0e-240 836.6 1020 44.6
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 3.4e-240 835.9 976 45.7
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 7.5e-240 834.7 1003 44.7
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 1.3e-239 833.9 1002 45.1
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 2.2e-239 833.2 897 49.2
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 7.0e-238 828.2 1032 44.2
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.0e-236 824.3 1011 43.8
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 2.3e-236 823.2 1030 42.8
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 5.0e-236 822.0 1013 43.3
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 6.6e-236 821.6 1004 44.5
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 1.9e-235 820.1 1016 44.3
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 4.3e-235 818.9 1025 43.1
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 6.2e-234 815.1 1018 44.0
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 2.3e-233 813.1 1007 43.7
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 6.8e-233 811.6 1015 42.2
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 2.2e-231 806.6 1017 42.5
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 2.3e-228 796.6 1017 42.2
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 2.8e-226 789.6 1017 41.7
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 1.2e-224 784.3 748 53.6
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 1.2e-224 784.3 1010 43.5
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 3.4e-224 782.7 998 43.2
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 9.9e-224 781.2 986 43.0
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 1.7e-223 780.4 1025 42.8
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 4.1e-222 775.8 1022 41.7
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 4.1e-222 775.8 1018 40.9
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 2.7e-221 773.1 1018 41.0
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 3.5e-221 772.7 1013 42.2
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 4.6e-221 772.3 938 43.2
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 6.0e-221 771.9 1024 42.3
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 6.8e-217 758.4 933 44.1
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 2.4e-214 750.0 926 44.0
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.0e-212 744.6 1012 41.5
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 1.9e-211 740.3 750 50.9
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 1.4e-209 734.2 1004 41.2
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 9.0e-209 731.5 1139 39.0
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.7e-207 727.2 814 47.7
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 2.1e-194 683.7 826 44.9
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 4.5e-192 676.0 1017 38.1
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 9.9e-192 674.9 933 41.7
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.4e-190 671.0 1015 39.7
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.1e-185 654.8 1016 37.7
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 1.5e-184 651.0 888 40.8
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 4.2e-182 642.9 1025 38.4
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.3e-180 637.9 747 42.6
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 6.9e-177 625.5 861 40.9
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 1.8e-169 600.9 1072 36.7
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 9.4e-166 588.6 1021 36.8
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 4.7e-165 586.3 841 40.2
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 7.0e-161 572.4 795 40.5
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 3.6e-157 560.1 721 41.5
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 9.7e-155 552.0 718 40.9
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 2.2e-146 524.2 1043 34.1
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.2e-140 503.1 578 44.6
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 5.0e-135 486.5 571 44.8
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 7.3e-118 429.5 742 35.3
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 9.8e-115 419.1 891 31.0
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 6.6e-111 406.4 438 48.9
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 9.5e-110 402.5 419 46.5
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 8.4e-98 362.8 500 44.4
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 4.2e-89 334.0 381 48.0
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 2.3e-79 301.6 1009 25.8
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 5.6e-78 297.0 1082 26.1
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 1.1e-73 282.7 1002 26.1
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.1e-65 256.1 514 31.9
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 3.1e-60 238.0 311 37.9
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 1.5e-59 235.7 253 48.6
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 1.3e-58 232.6 197 53.8
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 9.4e-57 226.5 423 32.2
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 5.7e-54 217.2 199 54.8
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.1e-52 213.0 238 49.6
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 5.9e-51 207.2 239 46.4
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 4.4e-46 191.0 437 32.0
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 4.8e-45 187.6 220 46.8
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.9e-41 175.6 175 48.0
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 3.6e-40 171.4 140 54.3
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 5.2e-39 167.5 148 53.4
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.0e-38 165.6 195 48.2
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 6.3e-37 160.6 157 47.8
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.0e-34 151.0 146 49.3
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 1.0e-23 116.7 148 43.9
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 1.8e-23 115.9 155 39.4
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 1.8e-23 115.9 249 28.1
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 2.3e-23 115.5 148 43.9
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 8.8e-23 113.6 113 50.4
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 7.5e-22 110.5 91 56.0
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 6.8e-15 87.4 96 53.1
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 1.5e-14 86.3 163 33.7
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 1.5e-14 86.3 95 40.0
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.7e-13 82.8 175 34.9
CBR_g36330 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-09 67.8 112 34.8
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.6e-09 67.8 79 50.6
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 6.8e-07 60.8 55 56.4
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 2.6e-06 58.9 46 50.0


User provided reference genes

Program Settings