Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 1.6e-89 332.8 176 100.0
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 4.6e-28 128.6 100 68.0
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 6.0e-28 128.3 103 66.0
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 7.8e-28 127.9 100 68.0
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 6.6e-27 124.8 99 66.7
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 1.6e-25 120.2 96 66.7
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 1.6e-25 120.2 101 68.3
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.6e-25 120.2 96 66.7
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.6e-25 120.2 96 66.7
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.6e-25 120.2 96 66.7
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 6.2e-25 118.2 100 66.0
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 8.1e-25 117.9 92 64.1
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 8.1e-25 117.9 107 64.5
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 1.4e-24 117.1 101 66.3
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 1.4e-24 117.1 100 66.0
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 1.8e-24 116.7 101 66.3
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 1.8e-24 116.7 101 66.3
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 2.4e-24 116.3 103 62.1
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.4e-24 116.3 96 63.5
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 3.1e-24 115.9 95 66.3
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 5.2e-24 115.2 104 58.7
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 3.4e-23 112.5 101 62.4
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 3.4e-23 112.5 100 61.0
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 4.4e-23 112.1 96 66.7
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 7.6e-23 111.3 95 60.0
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 9.9e-23 110.9 102 57.8
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 9.9e-23 110.9 100 59.0
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 9.9e-23 110.9 104 60.6
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 1.7e-22 110.2 100 60.0
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 2.2e-22 109.8 92 64.1
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 3.8e-22 109.0 101 60.4
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 4.9e-22 108.6 96 60.4
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 1.4e-21 107.1 99 58.6
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 4.2e-21 105.5 99 55.6
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 4.2e-21 105.5 99 55.6
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 4.2e-21 105.5 93 58.1
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 4.2e-21 105.5 93 59.1
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 9.3e-21 104.4 96 63.5
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 9.3e-21 104.4 97 59.8
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.2e-20 104.0 99 55.6
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 2.1e-20 103.2 96 55.2
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 2.7e-20 102.8 112 53.6
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.5e-20 102.4 96 57.3
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 6.0e-20 101.7 95 55.8
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 7.8e-20 101.3 102 54.9
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 7.8e-20 101.3 102 55.9
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 7.8e-20 101.3 102 55.9
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 7.8e-20 101.3 111 54.1
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 1.0e-19 100.9 100 54.0
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 1.3e-19 100.5 100 57.0
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.3e-19 100.5 95 56.8
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 1.3e-19 100.5 99 54.5
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.7e-19 100.1 91 58.2
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 2.3e-19 99.8 99 55.6
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 3.0e-19 99.4 100 57.0
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 5.1e-19 98.6 97 58.8
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 6.6e-19 98.2 96 54.2
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 8.7e-19 97.8 96 54.2
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 1.5e-18 97.1 99 57.6
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 2.5e-18 96.3 99 54.5
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 2.5e-18 96.3 91 57.1
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 3.3e-18 95.9 107 54.2
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 3.3e-18 95.9 95 54.7
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 7.3e-18 94.7 102 52.0
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 9.6e-18 94.4 100 53.0
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 9.6e-18 94.4 92 56.5
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 1.3e-17 94.0 98 50.0
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 1.6e-17 93.6 91 57.1
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 1.6e-17 93.6 91 57.1
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 1.6e-17 93.6 91 57.1
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 1.6e-17 93.6 91 57.1
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.6e-17 93.6 101 55.4
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.1e-17 93.2 99 55.6
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 6.2e-17 91.7 100 53.0
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 8.1e-17 91.3 90 56.7
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 1.1e-16 90.9 87 56.3
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 1.4e-16 90.5 101 51.5
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 4.0e-16 89.0 95 49.5
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 6.9e-16 88.2 99 45.5
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 1.5e-15 87.0 108 47.2
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 2.0e-15 86.7 91 53.8
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 2.6e-15 86.3 104 50.0
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 9.9e-15 84.3 100 49.0
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 9.9e-15 84.3 82 54.9
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 2.2e-14 83.2 100 50.0
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 3.2e-13 79.3 94 47.9
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 4.2e-13 79.0 102 48.0
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 7.1e-13 78.2 89 48.3
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 1.2e-12 77.4 90 47.8
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 2.1e-12 76.6 95 47.4
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 2.3e-11 73.2 100 46.0
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 8.7e-11 71.2 91 44.0
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.3e-09 67.4 76 48.7
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 4.8e-09 65.5 72 54.2
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.4e-08 63.2 74 52.7
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 3.1e-08 62.8 72 51.4
MD09G1181800 Malus domestica HOM05D008318 ORTHO05D010481 3.8e-06 55.8 119 33.6
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 3.8e-06 55.8 46 56.5
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 6.4e-06 55.1 132 34.1


User provided reference genes

Program Settings