Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.0e-144 516.9 302 100.0
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.1e-119 433.7 306 84.6
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 3.3e-119 432.2 306 84.3
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.3e-118 430.3 305 84.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 2.2e-118 429.5 306 80.7
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 2.8e-118 429.1 303 82.2
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 5.3e-117 424.9 304 79.3
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 6.9e-117 424.5 306 76.8
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 3.4e-116 422.2 303 83.2
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.7e-115 419.9 310 82.6
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.2e-115 419.5 303 80.9
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.5e-115 417.5 308 80.8
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 8.5e-115 417.5 307 80.5
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.4e-114 416.8 303 79.9
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.4e-114 416.8 306 78.8
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.2e-113 413.7 319 75.2
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.8e-112 409.8 304 79.9
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 2.3e-112 409.5 304 78.6
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 8.8e-112 407.5 306 79.7
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.1e-111 407.1 306 74.2
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 5.7e-111 404.8 306 80.1
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 2.8e-110 402.5 306 74.8
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 3.7e-110 402.1 306 78.8
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 6.3e-110 401.4 306 67.6
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 8.2e-110 401.0 306 67.6
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.4e-109 400.2 305 78.4
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 1.8e-109 399.8 304 79.6
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 2.4e-109 399.4 304 75.0
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 3.1e-109 399.1 309 78.3
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 4.1e-109 398.7 308 74.4
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 5.3e-109 398.3 304 80.9
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 9.1e-109 397.5 312 79.2
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.5e-108 396.7 312 67.0
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.5e-108 396.7 308 66.6
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 3.5e-108 395.6 306 79.4
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 2.9e-107 392.5 306 78.8
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 6.5e-107 391.3 314 76.1
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.1e-106 390.6 304 73.4
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 1.9e-106 389.8 308 77.6
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 5.5e-106 388.3 309 80.6
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.2e-105 387.1 299 67.2
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.2e-105 387.1 306 72.9
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 2.7e-105 386.0 307 74.3
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 8.0e-105 384.4 306 67.6
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.4e-104 383.6 306 68.0
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 5.2e-104 381.7 306 78.8
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.8e-104 380.9 311 71.4
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.1e-103 380.6 306 67.0
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 1.1e-103 380.6 306 67.3
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 1.5e-103 380.2 306 67.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.6e-103 379.4 304 67.4
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 3.3e-103 379.0 312 75.3
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 4.4e-103 378.6 306 73.5
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 5.7e-103 378.3 308 76.9
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 7.4e-103 377.9 310 66.8
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.3e-102 377.1 303 68.6
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.4e-101 373.6 304 65.5
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 4.1e-101 372.1 337 72.4
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 5.3e-101 371.7 306 72.5
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 7.0e-101 371.3 315 63.5
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.2e-100 370.5 319 73.0
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 5.9e-100 368.2 306 77.1
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 5.9e-100 368.2 284 76.8
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-99 367.1 307 63.5
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.7e-99 366.7 305 63.6
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.7e-99 366.7 308 62.0
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 2.2e-99 366.3 305 63.9
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 8.5e-99 364.4 307 72.6
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 7.2e-98 361.3 308 64.9
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.6e-97 360.1 315 68.6
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 1.6e-97 360.1 341 58.7
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.1e-97 359.8 319 71.5
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.7e-97 359.4 318 71.4
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.0e-96 357.5 308 61.4
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-96 357.1 304 63.2
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.8e-96 356.7 289 79.2
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 5.2e-96 355.1 307 70.7
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 5.2e-96 355.1 305 69.2
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 8.8e-96 354.4 308 60.7
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 2.6e-95 352.8 304 62.5
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 4.4e-95 352.1 305 63.9
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 4.8e-94 348.6 280 78.6
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.1e-93 347.4 318 66.7
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-93 347.1 281 77.6
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 3.1e-93 345.9 303 63.7
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 3.1e-93 345.9 306 73.5
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.7e-92 342.8 305 59.7
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 3.5e-92 342.4 306 74.2
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 5.9e-92 341.7 352 59.7
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 5.9e-92 341.7 352 59.7
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.9e-90 336.7 284 75.0
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 7.2e-90 334.7 305 58.4
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 9.4e-90 334.3 255 83.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 3.6e-89 332.4 255 83.1
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.6e-89 332.4 284 77.5
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.0e-88 330.9 293 72.0
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 5.7e-87 325.1 310 68.1
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 5.4e-85 318.5 337 53.4
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 9.1e-85 317.8 346 59.8
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 9.1e-85 317.8 346 59.8
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.2e-84 317.4 323 62.5
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.0e-84 316.6 255 76.9
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-82 310.8 302 56.0
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 8.0e-81 304.7 240 80.4
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 6.8e-80 301.6 305 55.1
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 9.8e-79 297.7 262 62.6
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 2.2e-78 296.6 257 62.6
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 5.4e-77 292.0 213 81.2
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 5.0e-75 285.4 213 81.7
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 8.6e-75 284.6 265 57.7
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 8.9e-72 274.6 231 62.8
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 7.5e-71 271.6 232 78.0
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.7e-70 270.4 293 51.9
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 2.2e-70 270.0 234 79.1
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.4e-69 266.5 232 76.7
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.3e-67 260.0 203 84.2
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 6.6e-67 258.5 231 60.6
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 8.6e-67 258.1 239 75.7
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.0e-63 246.9 249 57.4
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.4e-61 240.0 235 73.2
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 2.7e-60 236.5 292 50.0
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.3e-59 234.2 236 54.7
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.7e-59 233.8 214 73.4
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.3e-59 233.4 243 65.8
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 6.6e-59 231.9 230 70.9
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 1.5e-58 230.7 127 86.6
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 1.9e-58 230.3 230 71.7
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 9.2e-53 211.5 245 68.6
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 2.4e-48 196.8 309 49.2
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 6.8e-48 195.3 238 50.8
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 3.8e-46 189.5 230 50.9
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 3.8e-46 189.5 230 50.9
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 3.2e-45 186.4 288 55.2
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 5.4e-45 185.7 294 40.8
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.4e-40 171.0 243 53.9
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.4e-40 170.2 288 39.2
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.6e-39 166.8 146 75.3
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 3.2e-37 159.8 323 34.4
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 6.6e-35 152.1 149 75.2
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.9e-34 150.6 157 55.4
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.3e-34 149.8 74 87.8
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 2.1e-33 147.1 172 48.3
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 5.8e-31 139.0 73 79.5
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 1.2e-28 131.3 73 84.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 4.6e-28 129.4 244 37.3
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 5.1e-27 125.9 92 68.5
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.4e-24 117.9 156 62.8
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.0e-24 116.3 116 56.9
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 5.3e-24 115.9 59 81.4
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 2.5e-18 97.1 126 35.7
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 2.1e-17 94.0 47 83.0
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 9.0e-16 88.6 128 44.5
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 8.4e-14 82.0 84 52.4
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.7e-12 77.0 100 50.0
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 4.6e-12 76.3 70 64.3
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 4.5e-07 59.7 100 37.0


User provided reference genes

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