Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 4.1e-116 421.4 213 100.0
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 6.5e-53 211.5 202 51.5
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 1.1e-52 210.7 202 52.5
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 1.5e-49 200.3 222 50.0
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 7.5e-49 198.0 222 46.8
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 2.8e-48 196.1 221 47.5
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 1.1e-47 194.1 222 44.6
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 5.3e-47 191.8 224 44.2
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 1.2e-46 190.7 209 48.3
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 1.2e-46 190.7 216 46.3
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 1.0e-45 187.6 237 41.4
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 1.0e-45 187.6 241 44.8
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 6.5e-45 184.9 207 46.4
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 2.5e-44 183.0 217 46.1
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 1.2e-43 180.6 218 45.0
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 1.2e-41 174.1 228 43.0
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 2.6e-41 172.9 228 43.0
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 9.8e-41 171.0 161 50.9
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 4.8e-40 168.7 206 45.1
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.4e-39 167.2 216 41.7
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 5.4e-39 165.2 217 37.8
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 2.9e-37 159.5 162 49.4
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 3.8e-37 159.1 221 40.3
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 3.8e-37 159.1 219 40.2
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 3.8e-37 159.1 219 40.2
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 5.0e-37 158.7 218 41.3
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 6.5e-37 158.3 218 41.3
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 8.5e-37 157.9 218 39.9
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 1.9e-36 156.8 206 40.3
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 4.2e-36 155.6 219 40.2
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 4.2e-36 155.6 211 41.7
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 5.5e-36 155.2 221 41.2
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 9.4e-36 154.5 190 43.7
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 9.4e-36 154.5 223 40.4
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 2.1e-35 153.3 227 36.1
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 2.1e-35 153.3 228 39.9
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 2.7e-35 152.9 209 41.1
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 6.1e-35 151.8 177 44.1
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 1.4e-34 150.6 213 39.0
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 1.8e-34 150.2 195 41.0
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 3.0e-34 149.4 223 38.6
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 4.0e-34 149.1 203 43.3
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 5.2e-34 148.7 219 39.3
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.2e-33 147.5 178 44.4
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 1.5e-33 147.1 215 40.5
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.5e-33 147.1 208 39.4
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 2.0e-33 146.7 216 40.7
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 3.4e-33 146.0 226 37.6
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 4.4e-33 145.6 195 40.0
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 5.7e-33 145.2 217 38.7
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 2.8e-32 142.9 219 42.0
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 2.4e-31 139.8 197 39.1
Lj5g0022198 Lotus japonicus HOM05D008077 ORTHO05D010221 5.4e-31 138.7 146 50.0
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 7.7e-30 134.8 146 44.5
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 6.6e-29 131.7 202 32.7
COL.COLO4_28429 Corchorus olitorius HOM05D008077 ORTHO05D010221 8.6e-29 131.3 140 46.4
FAN24G1375 Fragaria x ananassa HOM05D008077 ORTHO05D010221 9.5e-28 127.9 177 38.4
FvH4_2g32450 Fragaria vesca HOM05D008077 ORTHO05D010221 8.0e-27 124.8 165 39.4
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 1.4e-26 124.0 146 40.4
FAN20G1346 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.8e-26 123.6 165 39.4
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 4.4e-25 119.0 173 41.0
MELO3C016846.2 Cucumis melo HOM05D008077 ORTHO05D010221 5.7e-25 118.6 159 42.8
Sed0028055 Sechium edule HOM05D008077 ORTHO05D010221 1.3e-24 117.5 144 44.4
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 4.9e-24 115.5 165 40.6
FAN27G3028 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.8e-23 113.6 165 38.2
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 7.0e-23 111.7 178 37.1
Migut.N02805 Erythranthe guttata HOM05D008077 ORTHO05D010221 1.2e-22 110.9 158 39.9
unitig_578.g16165 Utricularia gibba HOM05D008077 ORTHO05D010221 4.3e-20 102.4 106 42.5
HPP92_006033 Vanilla planifolia HOM05D008077 ORTHO05D010221 9.8e-17 91.3 202 31.2
TPR.G13160 Trifolium pratense HOM05D008077 ORTHO05D010221 2.2e-16 90.1 195 32.8
SGA_v2.0_scaffold152G36867 Striga asiatica HOM05D008077 ORTHO05D010221 3.7e-16 89.4 87 42.5
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 6.0e-14 82.0 176 29.0
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 7.8e-14 81.6 191 30.4
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 7.8e-14 81.6 179 29.6
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 1.7e-13 80.5 174 30.5
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 3.9e-13 79.3 176 27.8
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 5.0e-13 79.0 182 29.1
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 6.6e-13 78.6 209 27.8
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 6.6e-13 78.6 190 28.9
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.1e-12 77.8 184 28.3
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 1.5e-12 77.4 206 26.7
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 1.9e-12 77.0 207 29.0
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.5e-12 76.6 184 28.3
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 2.5e-12 76.6 184 28.3
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 3.3e-12 76.3 181 27.6
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 4.3e-12 75.9 166 28.9
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 5.6e-12 75.5 184 28.8
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.6e-11 73.9 187 28.9
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.6e-11 73.9 204 27.0
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 1.6e-11 73.9 165 28.5
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.6e-11 73.9 210 30.0
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.6e-11 73.9 196 27.6
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 1.6e-11 73.9 165 30.3
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 2.1e-11 73.6 174 29.3
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 4.7e-11 72.4 176 25.6
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 4.7e-11 72.4 160 31.9
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 6.2e-11 72.0 183 27.3
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 1.1e-10 71.2 108 34.3
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 1.8e-10 70.5 157 31.2
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.8e-10 70.5 167 26.3
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 2.3e-10 70.1 184 26.6
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 2.3e-10 70.1 108 34.3
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 3.1e-10 69.7 160 27.5
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 3.1e-10 69.7 196 25.0
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 3.1e-10 69.7 193 26.4
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 3.1e-10 69.7 177 28.8
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 4.0e-10 69.3 148 29.1
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 4.0e-10 69.3 160 26.9
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 5.2e-10 68.9 140 27.1
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 5.2e-10 68.9 185 26.5
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 5.2e-10 68.9 161 28.0
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 6.8e-10 68.6 172 27.3
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 8.9e-10 68.2 147 30.6
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 8.9e-10 68.2 127 32.3
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 8.9e-10 68.2 172 26.7
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 8.9e-10 68.2 161 28.0
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.2e-09 67.8 206 27.2
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 4.4e-09 65.9 186 24.7
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 5.8e-09 65.5 148 27.7
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 7.5e-09 65.1 164 27.4
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 7.5e-09 65.1 207 23.7
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 7.5e-09 65.1 178 28.1
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 7.5e-09 65.1 179 24.0
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 1.3e-08 64.3 139 30.2
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 1.7e-08 63.9 123 33.3
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 2.2e-08 63.5 162 25.9
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.9e-08 63.2 167 24.6
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 4.9e-08 62.4 191 23.6
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 6.4e-08 62.0 172 25.0
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 8.3e-08 61.6 137 29.9
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.4e-07 60.8 162 25.3
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 1.9e-07 60.5 159 25.8
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 2.4e-07 60.1 162 24.7
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 2.4e-07 60.1 203 25.6
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.4e-07 60.1 114 31.6
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 4.1e-07 59.3 152 26.3
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 4.1e-07 59.3 152 26.3
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 4.1e-07 59.3 173 24.3
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 4.1e-07 59.3 159 25.8
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 7.1e-07 58.5 114 30.7
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 9.2e-07 58.2 152 25.7
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 9.2e-07 58.2 152 25.7
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 9.2e-07 58.2 152 25.7
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 9.2e-07 58.2 180 23.3
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.2e-06 57.8 198 22.7
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.2e-06 57.8 134 27.6
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 2.7e-06 56.6 164 24.4
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 2.7e-06 56.6 118 28.8


User provided reference genes

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