Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 8.2e-157 557.0 277 100.0
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.2e-112 410.2 280 74.6
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 4.0e-111 405.2 281 72.6
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 5.8e-110 401.4 277 73.3
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 1.3e-109 400.2 275 72.4
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 2.2e-109 399.4 279 74.9
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 3.7e-109 398.7 277 72.2
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 8.3e-109 397.5 275 72.7
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.4e-108 394.8 277 72.2
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.4e-108 394.8 277 72.2
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.2e-107 393.7 277 72.2
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 2.1e-107 392.9 277 68.2
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 4.6e-107 391.7 277 71.5
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 4.6e-107 391.7 277 70.8
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.7e-106 389.8 277 71.5
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 1.7e-106 389.8 282 71.3
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 1.7e-106 389.8 281 71.5
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.3e-106 389.4 279 71.3
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 3.0e-106 389.0 284 71.5
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 3.9e-106 388.7 278 68.7
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 6.6e-106 387.9 279 69.9
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 8.6e-106 387.5 277 67.5
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 1.5e-105 386.7 246 76.4
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.9e-105 386.3 277 70.4
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 4.3e-105 385.2 279 69.5
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 9.5e-105 384.0 286 69.6
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 2.8e-104 382.5 279 69.9
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 3.6e-104 382.1 277 69.7
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 3.6e-104 382.1 279 66.3
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 6.2e-104 381.3 277 69.3
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 6.2e-104 381.3 275 68.0
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 8.1e-104 380.9 274 70.4
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 8.1e-104 380.9 278 68.7
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 8.1e-104 380.9 278 68.3
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.1e-103 380.6 277 69.0
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 1.1e-103 380.6 277 69.3
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 1.1e-103 380.6 279 69.5
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.4e-103 380.2 277 69.7
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 1.4e-103 380.2 275 67.6
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.8e-103 379.8 283 69.3
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 2.3e-103 379.4 283 68.9
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 2.3e-103 379.4 272 70.2
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 3.1e-103 379.0 279 65.9
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.1e-103 379.0 282 67.0
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 6.8e-103 377.9 247 74.5
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 8.9e-103 377.5 277 69.0
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 8.9e-103 377.5 278 68.3
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 8.9e-103 377.5 276 69.2
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.2e-102 377.1 287 66.6
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 1.5e-102 376.7 279 66.3
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.0e-102 376.3 277 70.0
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 2.0e-102 376.3 279 65.9
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.6e-102 375.9 278 68.3
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.6e-102 375.9 278 69.1
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.4e-102 375.6 278 68.3
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 5.8e-102 374.8 277 67.5
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 7.6e-102 374.4 277 69.3
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.3e-101 373.6 273 69.2
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.2e-101 372.9 277 67.1
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.7e-101 372.1 279 67.0
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 6.4e-101 371.3 278 66.5
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 1.1e-100 370.5 279 64.9
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.9e-100 369.8 277 67.1
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.4e-100 369.4 277 67.1
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 3.2e-100 369.0 241 73.9
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 3.2e-100 369.0 277 66.8
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 7.1e-100 367.9 279 67.7
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 3.5e-99 365.5 282 63.5
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 7.8e-99 364.4 278 65.1
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 7.8e-99 364.4 277 67.1
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-98 364.0 271 66.1
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-98 364.0 271 66.1
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.0e-98 364.0 273 67.8
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 1.3e-98 363.6 284 65.1
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 1.7e-98 363.2 283 63.6
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 2.3e-98 362.8 273 64.8
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 2.3e-98 362.8 284 66.5
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 3.9e-98 362.1 283 65.0
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 5.1e-98 361.7 283 64.3
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 6.6e-98 361.3 284 62.7
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 6.6e-98 361.3 282 64.2
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 6.6e-98 361.3 282 64.2
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 8.6e-98 360.9 283 64.7
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 8.6e-98 360.9 283 64.7
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 8.6e-98 360.9 283 64.7
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 8.6e-98 360.9 283 62.5
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.5e-97 360.1 284 62.3
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 1.5e-97 360.1 278 67.6
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 1.9e-97 359.8 282 63.8
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.5e-97 359.4 237 75.1
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 2.5e-97 359.4 274 67.2
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 3.3e-97 359.0 284 64.1
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 4.3e-97 358.6 284 62.7
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 4.3e-97 358.6 283 61.8
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 4.3e-97 358.6 273 67.4
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 5.6e-97 358.2 285 63.9
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 5.6e-97 358.2 285 63.9
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 5.6e-97 358.2 283 63.6
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 5.6e-97 358.2 278 65.1
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 7.3e-97 357.8 283 64.3
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 9.6e-97 357.5 283 62.5
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 9.6e-97 357.5 283 62.5
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 9.6e-97 357.5 278 65.5
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 9.6e-97 357.5 275 67.3
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 1.6e-96 356.7 276 63.8
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 1.6e-96 356.7 278 64.4
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 2.8e-96 355.9 275 64.4
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 3.6e-96 355.5 284 63.4
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 4.7e-96 355.1 284 63.0
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 1.4e-95 353.6 284 62.3
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 1.4e-95 353.6 284 62.3
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 1.4e-95 353.6 277 65.3
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 1.4e-95 353.6 273 65.2
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 1.8e-95 353.2 233 73.0
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 1.8e-95 353.2 277 65.0
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 4.0e-95 352.1 277 63.5
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 4.0e-95 352.1 284 62.3
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 4.0e-95 352.1 277 63.9
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 6.8e-95 351.3 277 62.8
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 8.9e-95 350.9 277 65.7
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 2.0e-94 349.7 285 61.4
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 2.0e-94 349.7 285 61.4
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 2.2e-93 346.3 274 63.9
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 2.9e-93 345.9 303 58.1
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 2.9e-93 345.9 280 61.4
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 1.1e-92 344.0 278 63.3
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 3.2e-92 342.4 280 60.7
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.2e-92 342.4 296 59.8
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 5.4e-92 341.7 237 70.9
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 9.3e-92 340.9 254 65.4
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 9.3e-92 340.9 276 62.0
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.7e-90 336.7 277 61.7
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 8.7e-90 334.3 278 61.9
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 3.3e-89 332.4 282 59.9
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.8e-87 326.6 271 60.5
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 2.4e-87 326.2 287 58.9
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 5.3e-87 325.1 278 59.4
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 5.8e-86 321.6 277 57.8
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 8.4e-85 317.8 277 59.9
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.2e-84 315.8 248 64.9
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.8e-79 300.1 185 76.2
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.4e-79 299.7 277 58.8
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 6.9e-79 298.1 284 54.6
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 1.2e-78 297.4 270 57.4
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 5.8e-78 295.0 198 69.7
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 7.6e-78 294.7 277 58.1
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 3.8e-77 292.4 278 55.4
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.0e-74 284.3 227 62.6
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.1e-72 276.6 271 52.0
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 6.0e-67 258.5 240 51.7
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 1.5e-65 253.8 222 56.8
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 7.4e-65 251.5 186 65.1
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 2.3e-58 229.9 235 46.4
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 5.7e-57 225.3 182 64.8
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 1.6e-56 223.8 280 40.7
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.1e-47 194.5 161 63.4
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 1.4e-47 194.1 159 62.9
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.7e-45 187.2 228 46.5
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 1.1e-44 184.5 160 59.4
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 3.2e-44 183.0 211 45.0
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 8.2e-40 168.3 177 54.2
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 2.4e-39 166.8 234 37.2
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.8e-34 150.6 137 59.1
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 6.7e-34 148.7 137 58.4
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 6.7e-34 148.7 137 58.4
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 2.2e-24 117.1 114 58.8
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-21 107.1 116 44.8
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 7.2e-20 102.1 74 62.2
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.8e-16 90.1 179 35.8


User provided reference genes

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