Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 5.0e-233 810.8 438 100.0
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.1e-198 696.8 434 83.9
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 4.9e-188 661.4 440 79.8
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 3.5e-186 655.2 435 78.9
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 6.6e-185 651.0 439 79.7
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 8.6e-185 650.6 438 77.9
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 1.5e-184 649.8 435 77.2
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.3e-184 648.7 430 80.7
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 8.1e-183 644.0 431 81.2
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 5.2e-182 641.3 430 80.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 7.6e-181 637.5 438 78.8
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 1.7e-180 636.3 456 76.5
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.9e-180 635.6 439 76.1
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.4e-179 633.3 438 77.4
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.4e-179 633.3 439 76.8
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.2e-179 632.1 430 77.9
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 1.6e-178 629.8 438 75.8
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 4.6e-178 628.2 470 76.0
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 6.0e-178 627.9 439 77.7
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 5.1e-177 624.8 434 76.7
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 6.6e-177 624.4 431 76.8
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 2.8e-175 619.0 439 75.4
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 6.2e-175 617.8 430 78.8
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 8.1e-175 617.5 437 74.1
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 1.4e-174 616.7 439 73.8
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 2.4e-174 615.9 439 77.9
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 9.0e-174 614.0 439 78.6
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 2.6e-173 612.5 424 75.7
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.3e-172 610.1 423 74.7
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.7e-172 609.8 441 75.3
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 6.4e-172 607.8 429 79.3
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-171 607.1 429 76.7
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.4e-171 606.7 435 75.9
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.9e-171 606.3 439 76.1
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 2.4e-171 605.9 429 78.6
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 7.1e-171 604.4 439 77.0
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.6e-170 603.2 423 79.2
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 1.6e-170 603.2 439 72.7
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 2.1e-170 602.8 429 76.0
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 3.5e-170 602.1 433 76.9
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 3.5e-170 602.1 439 72.2
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 1.7e-169 599.7 430 75.3
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 1.7e-169 599.7 430 75.3
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 3.0e-169 599.0 430 75.1
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 3.0e-169 599.0 430 75.1
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 3.0e-169 599.0 430 75.1
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 3.0e-169 599.0 434 77.6
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.6e-169 597.8 428 75.7
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 7.3e-168 594.3 440 72.3
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 2.1e-167 592.8 440 72.0
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 2.8e-167 592.4 430 74.7
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 6.2e-167 591.3 430 75.1
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 8.1e-167 590.9 429 74.4
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 8.1e-167 590.9 440 71.8
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.4e-166 590.1 440 70.9
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.8e-166 589.7 440 72.0
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 3.1e-166 589.0 427 73.5
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 6.9e-166 587.8 430 74.7
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 9.0e-166 587.4 440 70.2
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 3.4e-165 585.5 483 66.7
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 3.4e-165 585.5 425 72.7
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 3.4e-165 585.5 432 72.5
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 4.5e-165 585.1 421 73.6
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 4.5e-165 585.1 436 70.2
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 7.6e-165 584.3 440 69.3
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 3.8e-164 582.0 429 73.9
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 6.4e-164 581.3 439 72.7
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 8.4e-164 580.9 434 71.2
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 1.1e-163 580.5 429 73.9
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.2e-162 577.0 434 70.7
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.6e-162 576.6 429 70.9
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 1.6e-162 576.6 449 69.0
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 2.1e-162 576.2 423 77.1
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 2.7e-162 575.9 425 73.6
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 3.5e-162 575.5 440 68.9
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.8e-161 573.2 426 70.2
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 2.3e-161 572.8 426 70.2
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 3.9e-161 572.0 431 72.6
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 1.1e-160 570.5 407 73.5
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.9e-160 569.7 440 68.9
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 3.3e-160 568.9 422 77.0
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 5.6e-160 568.2 429 72.5
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 9.6e-160 567.4 434 69.6
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 3.7e-159 565.5 433 69.5
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 8.1e-159 564.3 457 68.1
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 1.1e-158 563.9 448 68.8
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 9.0e-158 560.8 389 74.3
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 7.6e-157 557.8 434 67.1
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 9.9e-157 557.4 439 68.6
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 3.8e-156 555.4 433 68.6
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.5e-155 552.7 423 69.0
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 5.5e-155 551.6 449 68.2
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.2e-154 550.4 475 65.7
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 6.0e-154 548.1 434 72.6
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.7e-153 544.7 430 68.1
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 3.3e-152 542.3 440 65.7
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 8.2e-151 537.7 425 66.8
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 2.4e-150 536.2 522 62.1
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.5e-149 533.5 431 70.5
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.0e-148 530.8 472 62.9
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.9e-147 526.6 444 67.8
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 2.7e-146 522.7 431 68.4
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 1.3e-145 520.4 521 57.2
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 1.1e-144 517.3 496 64.9
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 3.1e-142 509.2 393 69.7
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 5.3e-142 508.4 430 66.0
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 6.9e-142 508.1 389 76.6
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 6.5e-140 501.5 389 73.5
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 6.5e-140 501.5 438 63.5
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.5e-139 499.6 442 64.7
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.5e-136 489.6 431 63.6
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 3.3e-136 489.2 420 63.1
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 7.4e-136 488.0 378 73.3
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 2.7e-130 469.5 419 62.1
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.1e-126 457.6 326 76.7
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.5e-125 453.8 412 59.5
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 2.5e-123 446.4 443 55.8
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 5.2e-121 438.7 374 65.0
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 4.8e-119 432.2 425 55.3
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.6e-117 427.2 400 60.0
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.0e-116 424.5 422 59.7
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 2.2e-116 423.3 398 61.1
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 4.7e-114 415.6 416 56.2
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 3.1e-110 402.9 348 62.4
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.0e-108 397.9 438 57.3
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 5.5e-107 392.1 432 50.9
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.8e-100 369.4 356 59.0
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 2.3e-60 237.3 384 37.8
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 2.3e-60 237.3 234 58.1
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 9.9e-56 221.9 430 34.4
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 2.1e-34 151.0 205 55.1
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 1.1e-27 128.6 84 76.2
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.1e-17 95.5 55 83.6
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.2e-16 92.0 46 91.3
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.2e-16 92.0 46 91.3
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 5.5e-06 56.6 44 63.6


User provided reference genes

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