Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 1.7e-137 492.7 251 100.0
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 3.6e-95 352.1 251 70.5
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.0e-93 346.3 251 71.7
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 2.0e-93 346.3 250 72.0
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.6e-93 345.9 247 69.2
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 4.4e-93 345.1 251 67.7
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 5.8e-93 344.7 251 69.7
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 2.9e-92 342.4 251 68.5
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 3.8e-92 342.0 251 67.7
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 6.4e-92 341.3 251 68.9
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 2.4e-91 339.3 253 65.2
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 4.2e-91 338.6 252 71.8
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 5.4e-91 338.2 251 68.9
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 1.0e-89 334.0 252 69.0
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 1.0e-89 334.0 251 68.1
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 3.0e-89 332.4 226 71.7
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 1.5e-88 330.1 249 67.9
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 1.9e-88 329.7 241 68.5
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 1.3e-87 327.0 229 73.4
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 2.8e-87 325.9 251 66.9
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 4.8e-87 325.1 250 65.2
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 5.3e-86 321.6 250 62.0
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 6.9e-86 321.2 252 66.7
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 9.0e-86 320.9 250 65.2
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 2.6e-85 319.3 248 64.9
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 5.8e-85 318.2 252 64.3
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 9.9e-85 317.4 251 64.9
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 1.3e-84 317.0 251 64.9
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 1.7e-84 316.6 230 70.0
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 2.2e-84 316.2 252 66.3
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 2.9e-84 315.8 252 66.3
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 3.2e-83 312.4 250 60.4
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 5.4e-83 311.6 251 64.5
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 5.4e-83 311.6 251 64.1
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 9.3e-83 310.8 250 62.8
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 3.5e-82 308.9 247 60.7
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 3.5e-82 308.9 230 69.6
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.0e-81 307.4 249 59.8
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 1.3e-81 307.0 251 63.7
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 1.8e-81 306.6 251 60.6
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 3.9e-81 305.4 250 61.6
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 6.7e-81 304.7 252 62.3
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 1.5e-80 303.5 251 63.7
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 1.5e-80 303.5 252 63.1
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.9e-80 303.1 251 64.1
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 4.3e-80 302.0 292 56.8
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 5.6e-80 301.6 226 64.6
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 5.6e-80 301.6 226 64.6
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 1.3e-79 300.4 249 61.0
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 1.6e-79 300.1 220 69.5
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 1.6e-79 300.1 247 61.1
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 1.6e-79 300.1 252 63.1
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 3.7e-79 298.9 228 67.1
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 6.2e-79 298.1 246 60.2
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 6.9e-78 294.7 252 61.1
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 9.0e-78 294.3 246 61.4
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 1.2e-77 293.9 250 58.8
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 2.0e-77 293.1 250 58.4
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 5.8e-77 291.6 251 61.8
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 5.8e-77 291.6 251 61.8
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 7.6e-77 291.2 251 61.8
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 3.8e-76 288.9 251 62.2
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.4e-75 287.0 251 61.8
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 5.5e-75 285.0 250 56.8
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 3.5e-74 282.3 250 56.0
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 4.6e-74 282.0 251 59.0
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 3.9e-73 278.9 229 61.1
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 6.7e-73 278.1 229 60.3
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 1.1e-72 277.3 232 58.6
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 9.6e-72 274.2 204 69.6
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 1.3e-71 273.9 253 57.3
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 1.1e-70 270.8 252 55.6
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 1.1e-70 270.8 230 62.2
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 1.4e-70 270.4 253 55.7
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 1.8e-70 270.0 252 56.0
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 1.5e-69 266.9 249 56.6
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 2.6e-69 266.2 251 54.6
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 2.6e-69 266.2 251 55.0
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 2.6e-69 266.2 251 54.6
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 2.6e-69 266.2 251 54.6
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 2.6e-69 266.2 251 55.0
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 4.5e-69 265.4 247 54.3
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 2.5e-67 259.6 253 53.8
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 4.2e-67 258.8 248 53.2
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 2.7e-66 256.1 253 54.2
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 2.7e-66 256.1 253 54.2
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 4.3e-64 248.8 278 48.9
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 7.4e-64 248.1 247 55.9
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 1.3e-63 247.3 245 55.5
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 1.6e-63 246.9 253 53.4
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 2.8e-63 246.1 244 54.9
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 3.4e-61 239.2 192 61.5
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 3.8e-60 235.7 231 54.1
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 8.5e-60 234.6 224 59.4
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.4e-57 227.3 325 43.1
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 8.8e-57 224.6 255 48.6
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 2.5e-56 223.0 188 58.5
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 5.7e-56 221.9 244 50.8
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 1.1e-54 217.6 168 61.3
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 1.5e-53 213.8 165 68.5
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 2.7e-42 176.4 149 59.1
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 2.3e-41 173.3 136 65.4
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 3.1e-38 162.9 142 57.7
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 5.9e-37 158.7 244 41.4
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 3.6e-34 149.4 109 66.1
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-31 141.0 116 62.1
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-31 141.0 116 62.1
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 9.1e-30 134.8 205 39.0
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 2.4e-22 110.2 128 50.8
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 9.2e-22 108.2 164 38.4
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 3.5e-21 106.3 116 50.0
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 9.5e-19 98.2 197 31.5
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.6e-18 97.4 80 65.0
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 6.8e-17 92.0 62 71.0
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 1.1e-14 84.7 94 47.9
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 3.3e-11 73.2 156 28.8
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 8.0e-10 68.6 124 37.1


User provided reference genes

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