Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 8.8e-43 176.8 105 100.0
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 2.2e-17 92.4 107 52.3
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 3.7e-17 91.7 94 54.3
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.7e-17 91.7 88 55.7
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 4.8e-17 91.3 100 51.0
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.8e-16 89.4 90 55.6
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 2.4e-16 89.0 88 54.5
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 4.1e-16 88.2 104 51.0
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 5.4e-16 87.8 74 59.5
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 5.4e-16 87.8 105 44.8
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 7.0e-16 87.4 86 62.8
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.6e-15 86.3 104 50.0
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 1.6e-15 86.3 88 55.7
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.7e-15 85.5 107 48.6
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 2.7e-15 85.5 75 69.3
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 4.5e-15 84.7 88 53.4
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 4.5e-15 84.7 102 47.1
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.0e-14 83.6 75 58.7
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 2.2e-14 82.4 86 59.3
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 5.0e-14 81.3 81 53.1
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 5.0e-14 81.3 83 63.9
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 5.0e-14 81.3 90 52.2
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 8.5e-14 80.5 98 45.9
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 8.5e-14 80.5 108 47.2
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.1e-13 80.1 108 46.3
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.1e-13 80.1 108 46.3
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 1.1e-13 80.1 68 58.8
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 1.1e-13 80.1 85 48.2
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 1.9e-13 79.3 104 47.1
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 3.2e-13 78.6 87 54.0
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 3.2e-13 78.6 94 47.9
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 3.2e-13 78.6 81 56.8
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 5.5e-13 77.8 93 57.0
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 7.2e-13 77.4 81 51.9
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 9.5e-13 77.0 60 63.3
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 9.5e-13 77.0 90 52.2
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 1.6e-12 76.3 90 51.1
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.6e-12 76.3 76 51.3
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 1.6e-12 76.3 90 47.8
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 3.6e-12 75.1 113 46.0
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 3.6e-12 75.1 90 51.1
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 3.6e-12 75.1 79 60.8
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 6.1e-12 74.3 85 51.8
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 6.1e-12 74.3 90 51.1
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 8.0e-12 73.9 47 74.5
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.4e-11 73.2 103 42.7
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.4e-11 73.2 105 52.4
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.4e-11 73.2 105 52.4
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.4e-11 73.2 77 51.9
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 2.3e-11 72.4 86 46.5
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 2.3e-11 72.4 105 41.9
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 2.3e-11 72.4 105 43.8
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 4.0e-11 71.6 105 51.4
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 4.0e-11 71.6 82 52.4
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 5.2e-11 71.2 64 54.7
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 6.8e-11 70.9 75 50.7
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 6.8e-11 70.9 108 43.5
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 6.8e-11 70.9 59 61.0
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 8.8e-11 70.5 85 47.1
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 1.2e-10 70.1 81 49.4
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 1.2e-10 70.1 77 59.7
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 1.2e-10 70.1 77 59.7
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 1.5e-10 69.7 107 40.2
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.5e-10 69.7 77 49.4
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 1.5e-10 69.7 94 42.6
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 2.6e-10 68.9 64 56.2
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 2.6e-10 68.9 82 51.2
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 4.4e-10 68.2 80 47.5
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 5.7e-10 67.8 78 50.0
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 7.5e-10 67.4 77 46.8
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 7.5e-10 67.4 108 40.7
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 9.8e-10 67.0 94 43.6
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 9.8e-10 67.0 103 40.8
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 9.8e-10 67.0 86 43.0
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 9.8e-10 67.0 73 46.6
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 9.8e-10 67.0 74 48.6
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 9.8e-10 67.0 40 75.0
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 1.3e-09 66.6 69 52.2
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 1.3e-09 66.6 69 52.2
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 1.3e-09 66.6 89 44.9
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.7e-09 66.2 102 42.2
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 2.8e-09 65.5 107 39.3
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 3.7e-09 65.1 74 50.0
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 3.7e-09 65.1 97 39.2
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 3.7e-09 65.1 77 49.4
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 3.7e-09 65.1 74 48.6
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 4.9e-09 64.7 108 38.9
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 4.9e-09 64.7 88 48.9
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 1.4e-08 63.2 58 55.2
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 1.8e-08 62.8 84 42.9
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.4e-08 62.4 60 51.7
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 2.4e-08 62.4 109 42.2
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 2.4e-08 62.4 107 39.3
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 3.1e-08 62.0 108 45.4
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 3.1e-08 62.0 81 48.1
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 3.1e-08 62.0 108 40.7
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 4.1e-08 61.6 55 60.0
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 4.1e-08 61.6 77 46.8
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 5.4e-08 61.2 66 47.0
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 5.4e-08 61.2 66 47.0
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 5.4e-08 61.2 66 47.0
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 5.4e-08 61.2 66 47.0
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 5.4e-08 61.2 75 46.7
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 7.0e-08 60.8 66 47.0
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 7.0e-08 60.8 66 47.0
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 7.0e-08 60.8 66 47.0
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 7.0e-08 60.8 74 45.9
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 7.0e-08 60.8 77 51.9
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 9.2e-08 60.5 71 49.3
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 1.2e-07 60.1 108 42.6
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 2.0e-07 59.3 65 44.6
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 2.0e-07 59.3 107 38.3
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 2.7e-07 58.9 55 58.2
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 4.5e-07 58.2 108 36.1
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 3.8e-06 55.1 62 45.2
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 3.8e-06 55.1 62 50.0
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 5.0e-06 54.7 62 45.2
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 5.0e-06 54.7 62 45.2
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 5.0e-06 54.7 62 45.2
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 5.0e-06 54.7 62 45.2
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 5.0e-06 54.7 62 45.2


User provided reference genes

Program Settings