Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 3.3e-223 778.1 406 100.0
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 9.6e-138 494.2 407 67.3
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.1e-137 493.0 414 66.2
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 6.9e-136 488.0 411 65.9
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 4.5e-135 485.3 411 66.2
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 3.8e-134 482.3 406 67.0
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.2e-132 477.2 407 65.4
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.2e-132 477.2 407 65.4
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 4.6e-132 475.3 411 62.0
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 7.9e-132 474.6 409 65.0
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 5.1e-131 471.9 411 65.2
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 2.1e-129 466.5 413 63.7
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 3.7e-129 465.7 398 64.3
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.8e-128 463.4 413 62.5
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 9.0e-128 461.1 414 62.3
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.5e-127 460.3 411 62.0
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.4e-127 459.1 414 63.0
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 7.6e-127 458.0 415 62.7
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 1.3e-126 457.2 412 63.1
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.9e-125 453.4 402 63.2
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 7.9e-124 448.0 415 62.4
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 6.7e-123 444.9 403 62.5
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 1.9e-122 443.4 411 61.1
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 2.5e-122 443.0 407 60.0
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 4.3e-122 442.2 403 60.3
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 4.3e-122 442.2 404 60.9
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 7.4e-122 441.4 409 61.6
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 7.4e-122 441.4 414 61.1
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.3e-121 440.7 404 61.1
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 1.6e-121 440.3 413 60.5
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.8e-121 439.5 404 62.4
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 6.2e-121 438.3 412 60.7
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.1e-120 437.6 413 59.8
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.8e-120 436.8 416 60.6
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 2.4e-120 436.4 413 60.3
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 5.3e-120 435.3 410 61.0
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 5.3e-120 435.3 443 57.3
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 6.9e-120 434.9 421 60.3
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.2e-119 434.1 438 58.2
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.5e-119 433.7 416 60.6
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 2.0e-119 433.3 411 59.4
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 2.6e-119 433.0 392 61.2
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.8e-119 431.8 404 59.9
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 7.6e-119 431.4 399 61.7
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.0e-118 431.0 384 61.7
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 2.2e-118 429.9 383 61.1
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 2.9e-118 429.5 405 61.0
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 3.8e-118 429.1 413 59.3
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 8.4e-118 427.9 418 60.3
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 1.1e-117 427.6 407 60.2
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 3.2e-117 426.0 411 57.7
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.6e-116 423.7 412 56.6
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.6e-116 423.7 382 62.3
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 2.3e-115 419.9 337 68.5
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 3.0e-115 419.5 417 59.0
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 3.0e-115 419.5 404 59.2
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 6.7e-115 418.3 402 60.2
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.3e-113 414.1 397 58.4
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 1.6e-113 413.7 411 59.1
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 1.6e-113 413.7 408 57.1
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 2.2e-113 413.3 381 59.1
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 4.8e-113 412.1 427 57.8
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.1e-112 411.0 384 59.1
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.8e-112 410.2 429 54.1
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.1e-112 409.1 384 58.9
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 4.1e-112 409.1 359 63.5
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.3e-110 404.1 417 58.0
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.4e-109 400.6 418 55.3
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.9e-109 400.2 391 57.0
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 2.7e-108 396.4 409 54.5
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.4e-107 394.0 354 65.3
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.4e-107 394.0 409 57.9
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.8e-107 393.7 399 56.4
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 5.1e-107 392.1 506 48.8
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 5.1e-107 392.1 398 57.3
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.1e-106 391.0 358 63.4
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 7.4e-106 388.3 388 59.3
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.2e-105 386.7 372 61.8
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.4e-104 383.3 397 56.7
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 1.2e-103 380.9 421 53.7
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 3.8e-102 375.9 421 54.4
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 3.2e-101 372.9 391 53.2
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 5.5e-101 372.1 398 55.0
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 4.7e-100 369.0 373 57.6
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 6.1e-100 368.6 391 55.2
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.0e-99 366.3 392 54.1
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.3e-97 360.9 392 50.8
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.1e-96 355.9 502 46.2
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.2e-95 354.4 403 50.9
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 4.5e-95 352.4 406 52.2
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 3.8e-94 349.4 398 49.0
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 6.5e-94 348.6 399 52.9
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 1.9e-93 347.1 398 49.7
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 5.5e-93 345.5 399 50.1
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 2.7e-92 343.2 388 51.5
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 3.6e-92 342.8 399 50.1
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.0e-91 341.3 400 50.2
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.3e-91 340.1 407 49.1
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 3.3e-90 336.3 396 49.0
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 6.3e-89 332.0 436 47.2
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.6e-87 326.6 403 47.9
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.3e-86 324.3 403 46.7
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 1.2e-82 311.2 410 48.8
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 2.0e-82 310.5 425 44.9
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.4e-80 304.3 332 56.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 5.3e-80 302.4 334 55.1
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.8e-75 287.3 368 48.9
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 4.8e-73 279.3 292 56.5
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 8.6e-70 268.5 404 46.0
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 2.7e-63 246.9 357 47.9
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 4.5e-63 246.1 317 46.1
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 8.6e-62 241.9 322 49.4
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.5e-58 231.1 220 63.6
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 4.4e-58 229.6 347 45.5
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 9.8e-58 228.4 232 54.7
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.4e-56 224.6 440 38.4
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 5.4e-56 222.6 314 47.8
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 2.3e-54 217.2 226 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 7.1e-40 169.1 414 34.1
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 6.0e-31 139.4 78 78.2
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 3.9e-30 136.7 141 54.6
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 3.9e-30 136.7 141 54.6
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.3e-29 132.5 160 51.2
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.1e-28 131.0 131 52.7
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 5.3e-27 126.3 352 31.5
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 8.4e-25 119.0 290 32.8
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 2.4e-24 117.5 142 47.9
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 2.1e-20 104.4 97 67.0
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.3e-17 95.1 154 41.6
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.2e-16 90.5 71 76.1
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 9.6e-13 79.0 176 37.5
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.8e-12 77.4 39 76.9
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.7e-12 77.0 65 63.1
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.3e-09 68.6 79 46.8
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 1.9e-08 64.7 79 48.1
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.2e-08 63.5 125 37.6


User provided reference genes

Program Settings