Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 2.3e-151 538.9 270 100.0
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 3.8e-74 282.3 261 59.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 5.0e-74 282.0 261 59.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 7.2e-73 278.1 261 58.6
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.6e-72 276.9 273 57.9
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.5e-70 270.4 262 56.5
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.6e-70 269.6 272 58.5
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 6.3e-69 265.0 284 54.6
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 8.2e-69 264.6 264 56.4
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.1e-68 264.2 258 57.8
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.2e-67 260.8 272 55.5
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.6e-67 259.6 255 57.6
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.5e-67 259.2 256 57.4
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.3e-66 257.3 268 56.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.7e-66 256.9 269 55.4
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 2.2e-66 256.5 270 55.2
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 2.2e-66 256.5 263 54.0
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.8e-66 255.8 255 56.9
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 3.8e-66 255.8 270 55.9
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 5.0e-66 255.4 262 56.1
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 5.0e-66 255.4 270 55.9
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 6.5e-66 255.0 262 56.1
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.5e-66 255.0 270 57.0
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 6.5e-66 255.0 255 56.9
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 6.5e-66 255.0 270 54.4
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 8.5e-66 254.6 271 57.2
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.1e-65 254.2 253 57.3
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.1e-65 254.2 263 55.5
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.1e-65 254.2 263 55.5
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.5e-65 253.8 263 55.5
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.5e-65 253.8 272 56.2
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.9e-65 253.4 255 56.9
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 3.2e-65 252.7 263 55.1
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.6e-64 250.4 271 55.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.7e-64 249.6 252 56.3
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.7e-64 249.6 272 55.5
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 6.1e-64 248.4 262 54.6
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.4e-63 247.3 271 55.7
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.8e-63 246.9 248 56.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 3.0e-63 246.1 272 54.4
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 3.0e-63 246.1 253 54.9
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 3.0e-63 246.1 271 53.9
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.0e-63 246.1 265 54.7
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.5e-62 243.8 257 54.9
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.5e-62 243.8 272 54.0
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.6e-62 243.0 271 55.0
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 3.3e-62 242.7 274 52.9
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.4e-62 242.3 271 53.9
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 5.7e-62 241.9 261 53.6
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.7e-62 241.9 251 55.4
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 9.7e-62 241.1 273 54.9
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.3e-61 240.7 265 55.5
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.8e-61 239.6 271 53.9
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 4.8e-61 238.8 208 61.1
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 8.2e-61 238.0 259 56.0
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.4e-60 236.5 273 53.1
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.4e-60 236.5 273 53.1
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.4e-60 236.5 273 53.1
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 2.4e-60 236.5 258 55.0
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 5.3e-60 235.3 214 58.4
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 7.0e-60 235.0 244 57.4
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.2e-59 234.2 273 52.7
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.2e-59 234.2 271 53.1
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 3.5e-59 232.6 241 55.2
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.5e-59 232.3 273 52.4
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 7.7e-59 231.5 261 55.2
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.0e-58 231.1 265 50.9
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-58 231.1 259 54.4
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.3e-58 230.7 259 54.4
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 2.2e-58 229.9 255 54.5
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.8e-58 229.2 246 54.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 5.0e-58 228.8 258 55.0
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.0e-58 228.8 259 54.1
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.5e-58 228.4 273 51.6
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.5e-57 227.3 310 48.4
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.5e-57 227.3 260 54.2
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.9e-57 226.9 273 51.6
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.9e-57 226.9 262 51.5
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 2.5e-57 226.5 214 59.8
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 7.2e-57 224.9 210 58.1
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.2e-56 224.2 249 52.2
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.1e-56 223.4 272 51.5
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.7e-56 223.0 266 53.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.8e-55 220.3 264 52.3
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.3e-55 219.9 239 53.1
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.0e-55 219.5 255 51.4
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.0e-55 219.2 270 52.2
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.8e-55 218.4 255 52.2
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 8.8e-55 218.0 261 51.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 8.8e-55 218.0 261 51.0
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 8.8e-55 218.0 261 51.0
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 5.7e-54 215.3 267 51.7
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.7e-54 215.3 251 50.6
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 7.5e-54 214.9 242 52.5
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 9.8e-54 214.5 270 51.1
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 1.7e-53 213.8 274 49.6
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 2.2e-53 213.4 270 50.4
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.3e-53 211.8 270 49.3
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 8.3e-53 211.5 206 54.9
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.2e-51 207.6 268 47.4
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.8e-50 202.6 244 49.6
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 3.8e-50 202.6 277 46.9
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.2e-49 199.5 270 44.4
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.2e-49 199.1 279 46.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 8.0e-48 194.9 260 47.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.3e-47 193.4 272 45.6
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.3e-47 193.4 176 59.7
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 8.8e-47 191.4 249 47.4
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 2.0e-46 190.3 272 44.9
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 3.4e-46 189.5 280 42.5
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 3.7e-45 186.0 241 46.1
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 6.3e-45 185.3 255 45.1
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.6e-43 180.6 276 44.9
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.6e-43 180.6 271 44.6
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.7e-43 179.9 258 45.7
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.8e-40 169.9 177 52.5
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.4e-39 167.5 170 53.5
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 6.8e-39 165.2 209 46.4
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 8.9e-39 164.9 259 42.9
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.7e-38 162.2 248 42.7
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.3e-37 161.0 173 52.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.7e-37 159.5 257 40.1
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.7e-37 159.5 257 40.1
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.7e-37 159.5 277 41.5
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 8.3e-37 158.3 199 47.7
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.4e-36 157.5 173 50.9
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.4e-36 156.8 155 57.4
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 8.6e-34 148.3 243 42.8
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.1e-33 147.9 84 85.7
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.6e-30 136.7 206 41.7
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 4.4e-30 136.0 146 52.1
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.9e-29 132.5 211 40.3
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 8.3e-29 131.7 184 41.8
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 2.7e-27 126.7 184 40.2
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 2.5e-25 120.2 182 39.0
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.3e-25 119.8 159 40.9
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.3e-25 119.4 80 72.5
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.8e-24 116.7 139 51.1
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 7.5e-22 108.6 148 43.2
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.3e-18 97.1 136 46.3
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-16 91.3 120 46.7
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-16 91.3 120 46.7
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 3.6e-16 89.7 117 47.9
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.2e-12 76.6 84 52.4
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 5.4e-12 75.9 50 72.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 2.8e-08 63.5 63 54.0
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 3.4e-06 56.6 108 38.9


User provided reference genes

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