Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 2.7e-80 302.0 156 100.0
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.3e-63 246.5 148 87.8
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 9.0e-52 207.2 148 75.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 5.5e-49 198.0 117 89.7
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 5.5e-49 198.0 117 89.7
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 5.5e-49 198.0 117 89.7
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.6e-48 196.4 117 88.9
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 3.5e-48 195.3 117 89.7
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 4.6e-48 194.9 117 88.9
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.0e-47 193.7 117 88.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-47 193.4 110 92.7
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-47 193.4 110 92.7
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-47 193.4 110 92.7
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.8e-47 193.0 117 88.0
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.8e-47 193.0 117 88.0
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 2.3e-47 192.6 117 88.0
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 2.3e-47 192.6 117 88.0
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.0e-47 192.2 117 88.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 3.0e-47 192.2 117 87.2
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.0e-47 192.2 117 87.2
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 3.0e-47 192.2 117 87.2
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 3.0e-47 192.2 117 87.2
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 3.0e-47 192.2 117 88.0
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 3.0e-47 192.2 117 88.0
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 3.9e-47 191.8 117 86.3
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 3.9e-47 191.8 117 87.2
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 5.1e-47 191.4 117 88.0
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 6.7e-47 191.0 117 88.0
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.7e-47 190.7 117 87.2
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 8.7e-47 190.7 117 87.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 8.7e-47 190.7 121 84.3
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 8.7e-47 190.7 127 81.9
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.1e-46 190.3 117 87.2
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.5e-46 189.9 117 86.3
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 2.5e-46 189.1 117 86.3
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.5e-46 189.1 117 87.2
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.5e-46 189.1 117 87.2
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 3.3e-46 188.7 117 85.5
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 9.6e-46 187.2 110 90.0
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.1e-45 186.0 117 86.3
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 6.2e-45 184.5 117 83.8
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.8e-44 183.0 117 83.8
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.1e-44 182.2 110 88.2
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 5.3e-44 181.4 110 89.1
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 5.3e-44 181.4 117 84.6
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 9.0e-44 180.6 117 82.9
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 9.0e-44 180.6 117 83.8
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.6e-43 179.1 108 89.8
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.6e-43 179.1 117 83.8
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 5.8e-43 177.9 123 80.5
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.2e-42 176.0 108 88.0
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.5e-42 174.5 116 81.9
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 5.5e-41 171.4 128 76.6
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 5.1e-39 164.9 117 78.6
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 5.1e-39 164.9 117 78.6
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 5.1e-39 164.9 117 78.6
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 5.1e-39 164.9 117 78.6
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 5.1e-39 164.9 117 78.6
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 5.1e-39 164.9 117 78.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.1e-38 163.7 94 91.5
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.9e-38 162.9 122 73.8
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 7.4e-38 161.0 114 78.1
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 7.4e-38 161.0 114 77.2
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 9.7e-38 160.6 112 79.5
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 2.8e-37 159.1 113 78.8
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 4.8e-37 158.3 112 76.8
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 8.2e-37 157.5 98 85.7
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.1e-36 155.6 121 68.6
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 4.1e-36 155.2 103 80.6
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.2e-35 153.7 110 74.5
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.6e-35 152.5 117 74.4
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 5.9e-35 151.4 88 90.9
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 5.9e-35 151.4 92 88.0
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-34 150.2 95 84.2
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-34 150.2 95 84.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.3e-34 150.2 117 73.5
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.7e-34 149.8 92 85.9
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 5.0e-34 148.3 88 88.6
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 8.5e-34 147.5 92 85.9
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 7.2e-33 144.4 91 84.6
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-30 136.7 81 88.9
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 3.6e-24 115.5 64 93.8
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 6.7e-23 111.3 94 66.0
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 6.7e-23 111.3 102 63.7
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.4e-20 103.6 89 67.4
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.8e-20 103.2 90 66.7
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.3e-18 97.1 88 64.8
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.3e-18 97.1 88 64.8
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.3e-15 86.3 50 86.0
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 2.6e-14 82.8 66 71.2
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 3.7e-13 79.0 55 74.5
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.4e-12 76.3 46 87.0
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 7.0e-12 74.7 46 87.0
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 9.1e-12 74.3 45 88.9
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 5.9e-11 71.6 44 86.4
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.2e-09 65.9 97 47.4
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.1e-08 61.6 33 93.9
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-07 60.5 42 71.4


User provided reference genes

Program Settings