Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 1.6e-219 765.8 378 100.0
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.8e-210 735.7 371 99.5
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 8.7e-210 733.4 371 99.2
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 7.5e-145 517.7 318 79.6
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 2.2e-144 516.2 335 75.5
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 8.3e-144 514.2 319 77.1
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 9.2e-143 510.8 316 79.7
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 9.2e-143 510.8 315 78.7
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.1e-142 509.6 332 73.5
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 6.0e-142 508.1 335 73.7
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.3e-141 506.1 356 71.6
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 3.0e-141 505.8 357 72.3
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 3.0e-141 505.8 318 77.0
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 5.1e-141 505.0 318 76.4
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 6.6e-141 504.6 366 70.2
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 6.6e-141 504.6 330 75.5
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 8.6e-141 504.2 375 69.6
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 1.1e-140 503.8 370 70.3
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.1e-140 503.8 315 79.0
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.5e-140 503.4 315 77.1
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.9e-140 503.1 348 72.7
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 1.9e-140 503.1 370 70.0
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.5e-140 502.7 356 71.1
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 5.6e-140 501.5 360 69.2
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 5.6e-140 501.5 349 71.1
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.6e-139 500.0 335 74.0
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 2.8e-139 499.2 318 75.8
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.6e-139 498.8 318 76.4
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 4.7e-139 498.4 357 69.7
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 6.2e-139 498.0 348 72.1
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 1.4e-138 496.9 335 72.8
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.4e-138 496.9 370 69.2
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.8e-138 496.5 358 71.2
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 5.2e-138 495.0 318 73.9
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.5e-137 493.4 381 66.7
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.0e-137 493.0 339 71.7
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 2.0e-137 493.0 319 75.5
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 2.6e-137 492.7 325 74.2
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 3.4e-137 492.3 318 75.2
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.4e-137 491.9 337 73.3
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 5.8e-137 491.5 337 72.7
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 5.8e-137 491.5 392 64.3
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 7.6e-137 491.1 320 74.1
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 7.6e-137 491.1 364 68.7
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 9.9e-137 490.7 325 74.2
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.3e-136 490.3 335 72.5
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.7e-136 490.0 325 74.5
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.7e-136 490.0 382 66.8
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.7e-136 490.0 339 71.1
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 2.2e-136 489.6 387 66.4
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.2e-136 489.6 388 64.4
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 2.2e-136 489.6 387 66.4
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 2.2e-136 489.6 325 74.5
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.2e-136 489.6 366 68.6
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.9e-136 489.2 339 71.4
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 3.8e-136 488.8 325 74.2
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.1e-135 487.3 333 71.5
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.1e-135 487.3 325 73.8
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.1e-135 487.3 325 73.8
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.4e-135 486.9 342 70.5
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.4e-135 486.9 335 72.5
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.9e-135 486.5 344 69.5
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 4.1e-135 485.3 350 69.1
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 9.2e-135 484.2 321 73.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.2e-134 483.8 361 67.6
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 2.1e-134 483.0 346 69.7
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 2.7e-134 482.6 318 73.9
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 4.6e-134 481.9 322 71.1
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.7e-133 479.9 303 77.2
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 3.0e-133 479.2 318 71.7
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.1e-132 477.2 347 67.4
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 9.6e-132 474.2 316 72.5
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.2e-131 473.8 315 72.7
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.2e-131 471.5 332 69.0
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.4e-130 470.3 347 66.3
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.4e-130 470.3 347 66.3
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.8e-130 469.9 318 69.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.4e-130 469.5 318 71.7
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.4e-130 469.5 318 70.1
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 2.4e-130 469.5 347 66.0
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 3.1e-130 469.2 318 70.8
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.0e-130 468.8 367 65.7
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.6e-129 466.1 347 65.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 5.8e-129 464.9 347 65.4
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 7.6e-129 464.5 316 69.9
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.3e-128 463.8 316 70.9
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.3e-128 463.8 348 65.8
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 3.8e-128 462.2 319 69.9
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.1e-127 460.7 336 66.7
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.4e-127 460.3 313 70.3
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.2e-126 457.2 319 69.0
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.9e-124 449.9 287 76.3
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 4.8e-123 445.3 428 55.6
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 1.4e-122 443.7 300 74.0
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 4.5e-121 438.7 348 61.8
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 5.4e-119 431.8 348 64.9
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 6.0e-118 428.3 332 63.9
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.9e-116 423.3 378 61.1
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 3.3e-116 422.5 292 71.6
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.8e-115 418.7 268 75.4
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.8e-114 416.8 318 66.4
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 9.0e-114 414.5 316 64.6
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 2.4e-111 406.4 295 71.2
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 5.5e-111 405.2 272 74.6
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 9.3e-111 404.4 299 65.6
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.8e-109 400.2 521 45.5
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 5.1e-109 398.7 268 72.0
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 6.7e-109 398.3 261 73.2
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 3.3e-108 396.0 298 66.4
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 3.7e-107 392.5 309 67.3
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 2.6e-105 386.3 325 64.0
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.3e-96 357.5 349 51.6
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 3.6e-94 349.4 324 55.2
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.6e-94 349.4 314 55.1
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 5.7e-92 342.0 342 55.8
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.3e-91 340.9 314 52.5
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.1e-90 336.3 320 50.6
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 5.0e-88 328.9 262 66.4
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.4e-85 320.9 220 65.0
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 2.6e-81 306.6 216 68.5
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.6e-76 290.0 232 66.8
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 7.4e-76 288.5 205 68.3
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.2e-75 287.0 269 53.9
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 1.3e-72 277.7 207 68.6
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 9.4e-71 271.6 171 75.4
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 6.3e-67 258.8 188 69.7
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.1e-66 258.1 219 63.5
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.2e-63 246.5 244 51.6
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.3e-53 213.8 224 52.7
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 5.9e-49 199.1 117 75.2
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.1e-42 178.3 150 64.0
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 7.8e-41 172.2 321 34.0
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.2e-38 164.9 303 34.3
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.2e-38 164.9 146 53.4
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 1.1e-34 151.8 90 76.7
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 9.5e-31 138.7 74 86.5
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 6.2e-30 136.0 313 31.3
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.8e-21 107.8 97 48.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 3.8e-19 100.1 103 49.5
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 5.4e-18 96.3 78 69.2
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 3.3e-15 87.0 188 28.7
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.6e-14 84.7 90 56.7


User provided reference genes

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