Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 7.1e-51 203.8 112 100.0
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 8.5e-44 180.3 112 89.3
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 8.5e-44 180.3 112 88.4
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.1e-43 179.9 110 88.2
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 1.9e-43 179.1 112 90.2
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 3.2e-43 178.3 112 86.6
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.2e-42 176.4 112 88.4
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 89.3
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 88.4
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 88.4
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 2.7e-42 175.3 112 88.4
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 2.7e-42 175.3 112 87.5
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 2.7e-42 175.3 110 85.5
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 3.6e-42 174.9 112 89.3
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 4.6e-42 174.5 112 87.5
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 6.1e-42 174.1 112 86.6
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 6.1e-42 174.1 112 87.5
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 7.9e-42 173.7 112 87.5
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 7.9e-42 173.7 112 88.4
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 7.9e-42 173.7 112 88.4
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.3e-41 172.9 112 83.9
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.8e-41 172.6 112 86.6
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 1.8e-41 172.6 112 86.6
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 86.6
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 2.3e-41 172.2 112 85.7
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.0e-41 171.8 112 86.6
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 3.0e-41 171.8 112 86.6
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 5.1e-41 171.0 112 86.6
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 5.1e-41 171.0 112 86.6
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.7e-41 170.6 112 86.6
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.7e-41 170.6 112 86.6
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 6.7e-41 170.6 112 86.6
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 6.7e-41 170.6 109 86.2
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 8.7e-41 170.2 112 85.7
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 8.7e-41 170.2 112 85.7
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 1.5e-40 169.5 112 84.8
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 1.5e-40 169.5 107 86.0
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.9e-40 169.1 112 83.9
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.9e-40 169.1 110 86.4
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 2.5e-40 168.7 112 83.9
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 2.5e-40 168.7 112 83.9
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 2.5e-40 168.7 112 83.0
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 3.3e-40 168.3 110 86.4
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 83.0
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 83.9
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 84.8
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 83.9
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 83.9
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 5.7e-40 167.5 112 85.7
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 7.4e-40 167.2 112 83.0
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 7.4e-40 167.2 110 84.5
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 7.4e-40 167.2 112 83.9
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 9.7e-40 166.8 112 83.0
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 2.8e-39 165.2 110 85.5
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 2.8e-39 165.2 113 81.4
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 2.8e-39 165.2 112 83.0
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.7e-39 164.9 112 83.0
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 4.8e-39 164.5 128 76.6
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 6.3e-39 164.1 110 84.5
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 6.3e-39 164.1 112 82.1
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 6.3e-39 164.1 112 83.9
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 81.2
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 81.2
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 82.1
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 1.1e-38 163.3 112 83.9
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 1.1e-38 163.3 110 83.6
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 1.1e-38 163.3 112 83.0
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.8e-38 162.5 109 84.4
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.8e-38 162.5 112 81.2
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.4e-38 162.2 110 83.6
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 3.1e-38 161.8 112 81.2
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 3.1e-38 161.8 112 81.2
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 3.1e-38 161.8 112 81.2
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 5.3e-38 161.0 112 78.6
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 5.3e-38 161.0 110 80.9
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 6.9e-38 160.6 110 79.1
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 6.9e-38 160.6 110 80.0
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 9.1e-38 160.2 110 80.0
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 9.1e-38 160.2 134 72.4
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.2e-37 159.8 112 81.2
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.2e-37 159.8 112 81.2
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.2e-37 159.8 110 80.0
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 1.5e-37 159.5 108 81.5
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 1.5e-37 159.5 108 81.5
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.0e-37 159.1 112 77.7
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 79.1
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 2.6e-37 158.7 112 82.1
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 79.1
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 4.5e-37 157.9 110 79.1
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 4.5e-37 157.9 110 79.1
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 4.5e-37 157.9 110 79.1
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 4.5e-37 157.9 110 79.1
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 4.5e-37 157.9 112 80.4
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 4.5e-37 157.9 112 80.4
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 5.9e-37 157.5 110 78.2
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 5.9e-37 157.5 112 81.2
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 1.0e-36 156.8 110 79.1
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.0e-36 156.8 112 80.4
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 1.0e-36 156.8 106 80.2
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 1.3e-36 156.4 99 86.9
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 1.3e-36 156.4 103 80.6
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 2.2e-36 155.6 111 79.3
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 8.5e-36 153.7 110 77.3
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 8.5e-36 153.7 112 79.5
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 76.4
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.4e-35 152.9 100 82.0
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.9e-35 152.5 112 80.4
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 76.4
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 1.6e-34 149.4 99 81.8
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 1.6e-34 149.4 112 76.8
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.1e-34 149.1 112 76.8
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.8e-33 146.0 100 83.0
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 2.3e-33 145.6 112 77.7
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.0e-33 145.2 106 74.5
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 5.1e-33 144.4 115 75.7
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.1e-32 143.3 100 74.0
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.5e-32 142.9 112 74.1
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 1.5e-32 142.9 108 72.2
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 2.0e-32 142.5 112 74.1
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 5.7e-32 141.0 112 73.2
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 5.7e-32 141.0 108 74.1
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 4.8e-31 137.9 112 71.4
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.8e-30 136.0 100 74.0
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.4e-30 135.6 182 52.2
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 3.1e-30 135.2 112 71.4
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 5.9e-29 131.0 94 75.5
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.3e-28 129.8 112 68.8
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 9.4e-27 123.6 101 65.3
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.2e-26 123.2 112 67.0
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 8.0e-26 120.6 108 64.8
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 6.7e-25 117.5 84 82.1
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.8e-25 117.1 112 65.2
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 2.2e-23 112.5 110 60.9
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 9.1e-22 107.1 68 85.3
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.3e-15 86.7 74 70.3
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 1.7e-15 86.3 59 81.4
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 2.2e-15 85.9 53 84.9
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 2.2e-15 85.9 62 75.8
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.1e-14 83.6 50 88.0
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 9.1e-14 80.5 93 57.0
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 1.6e-13 79.7 62 72.6
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 2.7e-13 79.0 111 49.5
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 5.0e-12 74.7 62 69.4
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 1.9e-11 72.8 52 75.0
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 2.2e-07 59.3 102 40.2


User provided reference genes

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