Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.0e-125 453.4 222 100.0
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 2.5e-39 166.4 208 46.6
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 5.6e-39 165.2 180 50.6
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.5e-39 164.5 160 51.2
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.3e-37 159.8 181 48.1
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.8e-37 158.3 168 49.4
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 7.5e-36 154.8 183 46.4
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.8e-36 154.5 175 50.9
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.7e-35 153.7 211 42.7
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 6.4e-35 151.8 205 44.9
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.1e-34 151.0 188 45.2
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.4e-34 150.6 183 47.0
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.4e-34 149.8 189 48.7
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 3.2e-34 149.4 205 42.4
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 5.4e-34 148.7 143 52.4
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 5.4e-34 148.7 190 44.7
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 7.1e-34 148.3 169 47.9
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.7e-33 146.4 173 45.7
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 3.5e-33 146.0 211 40.8
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 6.0e-33 145.2 175 49.7
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 6.0e-33 145.2 201 43.3
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 6.0e-33 145.2 200 45.5
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 6.0e-33 145.2 206 42.2
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.3e-32 144.1 179 44.1
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.7e-32 143.7 159 50.3
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.7e-32 143.7 159 50.3
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.3e-32 143.3 145 49.7
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 8.6e-32 141.4 174 43.7
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.1e-31 141.0 143 51.0
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.5e-31 140.6 144 49.3
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.5e-31 140.6 168 43.5
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.5e-31 140.6 188 43.6
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 1.5e-31 140.6 153 46.4
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.9e-31 140.2 160 45.6
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.5e-31 139.8 145 49.7
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 2.5e-31 139.8 173 42.8
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 5.6e-31 138.7 173 45.1
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 9.5e-31 137.9 187 42.8
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.2e-30 137.5 218 39.4
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.2e-30 137.5 159 47.2
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.6e-30 137.1 147 49.7
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.6e-30 137.1 201 41.8
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.6e-30 137.1 201 41.8
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 3.6e-30 136.0 165 46.1
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 6.2e-30 135.2 190 40.5
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 8.1e-30 134.8 168 44.0
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 1.1e-29 134.4 188 41.5
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 1.4e-29 134.0 168 48.2
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.4e-29 134.0 149 47.7
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.8e-29 133.7 214 40.7
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.8e-29 133.7 183 43.7
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.1e-29 132.9 177 41.8
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 6.8e-29 131.7 162 45.1
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 8.9e-29 131.3 192 39.1
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.2e-28 131.0 187 40.6
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 2.0e-28 130.2 139 44.6
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 2.6e-28 129.8 213 39.4
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 2.6e-28 129.8 187 41.2
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 3.4e-28 129.4 188 41.5
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 4.4e-28 129.0 191 41.9
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 5.8e-28 128.6 145 44.8
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 5.8e-28 128.6 189 39.2
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 5.8e-28 128.6 177 41.8
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 9.9e-28 127.9 163 39.9
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 9.9e-28 127.9 189 39.7
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 9.9e-28 127.9 177 41.8
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 1.3e-27 127.5 171 43.3
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.8e-27 125.9 193 40.4
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 4.9e-27 125.6 185 42.7
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 4.9e-27 125.6 219 36.5
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 4.9e-27 125.6 194 39.2
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 4.9e-27 125.6 179 41.3
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 4.9e-27 125.6 202 38.1
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.4e-27 125.2 162 42.6
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.1e-26 124.4 201 39.3
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.1e-26 124.4 204 37.3
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.1e-26 124.4 172 44.2
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.1e-26 124.4 172 44.2
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.9e-26 123.6 189 37.6
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.4e-26 123.2 191 39.8
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 2.4e-26 123.2 186 42.5
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 4.1e-26 122.5 181 40.3
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 5.4e-26 122.1 185 42.2
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 5.4e-26 122.1 181 39.8
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 9.2e-26 121.3 147 42.2
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 9.2e-26 121.3 204 37.7
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.2e-25 120.9 146 42.5
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 1.2e-25 120.9 184 39.1
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 1.6e-25 120.6 189 39.2
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.6e-25 120.6 146 43.2
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 2.1e-25 120.2 154 42.9
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 3.5e-25 119.4 156 44.2
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 3.5e-25 119.4 179 40.2
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.6e-25 119.0 179 38.0
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 4.6e-25 119.0 198 34.8
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 6.0e-25 118.6 151 42.4
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 6.0e-25 118.6 189 36.5
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.3e-24 117.5 171 40.4
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.3e-24 117.5 154 42.9
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.7e-24 117.1 137 44.5
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 3.9e-24 115.9 182 38.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 5.1e-24 115.5 144 41.0
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 6.6e-24 115.2 144 40.3
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.1e-23 114.4 150 40.7
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.9e-23 113.6 144 42.4
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 3.3e-23 112.8 147 41.5
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.3e-23 112.8 144 40.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 5.6e-23 112.1 162 40.7
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 5.6e-23 112.1 146 45.2
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 7.3e-23 111.7 144 40.3
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 7.3e-23 111.7 138 42.0
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.2e-22 110.9 179 36.9
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.6e-22 110.5 146 39.7
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 2.8e-22 109.8 184 39.1
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.6e-22 109.4 151 41.7
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 3.6e-22 109.4 144 38.9
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 4.7e-22 109.0 144 40.3
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 8.1e-22 108.2 148 40.5
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 8.1e-22 108.2 172 36.6
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 8.1e-22 108.2 172 36.6
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 8.1e-22 108.2 172 36.6
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.4e-21 107.5 144 38.9
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.8e-21 107.1 136 39.7
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-20 104.0 148 37.8
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-20 104.0 144 38.2
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 1.5e-20 104.0 148 37.8
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 1.5e-20 104.0 147 40.8
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 2.0e-20 103.6 145 42.8
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 2.0e-20 103.6 144 36.1
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 2.0e-20 103.6 145 38.6
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 2.0e-20 103.6 144 36.1
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 2.0e-20 103.6 145 38.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 2.0e-20 103.6 144 38.2
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 2.6e-20 103.2 153 38.6
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.4e-20 102.8 146 38.4
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 4.4e-20 102.4 147 39.5
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-19 100.9 146 37.7
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-19 100.9 147 39.5
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-19 100.9 144 37.5
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.7e-19 100.5 147 39.5
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.7e-19 100.5 101 46.5
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.9e-19 99.8 157 36.9
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-19 99.8 144 38.2
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 2.9e-19 99.8 144 38.2
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 2.9e-19 99.8 144 38.2
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 2.9e-19 99.8 144 38.2
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 2.9e-19 99.8 144 38.2
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.9e-19 99.8 155 36.8
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 3.8e-19 99.4 134 38.8
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.8e-19 99.4 144 37.5
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 4.9e-19 99.0 144 39.6
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 6.4e-19 98.6 162 37.0
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 6.4e-19 98.6 185 35.7
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 6.4e-19 98.6 185 35.7
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 8.4e-19 98.2 146 37.0
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 8.4e-19 98.2 159 38.4
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-18 97.4 147 39.5
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-18 97.4 185 35.1
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-18 97.4 165 38.2
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.9e-18 97.1 144 37.5
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.4e-18 96.7 145 38.6
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 3.2e-18 96.3 159 37.7
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 4.2e-18 95.9 151 35.1
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 4.2e-18 95.9 153 39.9
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 4.2e-18 95.9 145 38.6
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 5.4e-18 95.5 145 37.9
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 9.3e-18 94.7 146 39.0
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 9.3e-18 94.7 144 38.2
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 1.6e-17 94.0 147 38.1
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 2.7e-17 93.2 147 38.1
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.7e-17 93.2 147 37.4
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 4.6e-17 92.4 96 46.9
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.6e-17 92.4 181 36.5
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 6.0e-17 92.0 92 46.7
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.0e-16 91.3 153 39.9
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 5.1e-16 89.0 169 35.5
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.2e-11 73.6 93 37.6
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 1.1e-07 61.2 86 39.5
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 4.3e-07 59.3 56 58.9


User provided reference genes

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