Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 0.0e+00 1676.8 867 100.0
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 0.0e+00 1494.9 867 90.9
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 0.0e+00 1343.2 724 95.7
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.1e-218 762.7 882 49.0
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 2.6e-217 759.6 885 48.7
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 4.9e-216 755.4 885 48.9
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.8e-213 746.9 870 48.6
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 6.7e-213 745.0 887 48.1
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 8.7e-213 744.6 888 47.3
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 5.6e-212 741.9 878 48.5
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.4e-210 737.3 882 48.4
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.8e-210 736.9 888 48.3
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.0e-210 735.7 886 48.4
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.3e-210 735.3 879 46.8
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 5.3e-210 735.3 889 47.2
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.2e-209 734.2 888 47.2
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.0e-209 733.4 874 48.2
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.7e-208 730.3 879 46.9
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.2e-207 725.7 885 47.3
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.7e-206 723.0 885 47.2
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 4.6e-206 722.2 893 46.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 4.6e-206 722.2 860 47.8
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.7e-205 718.4 888 47.2
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.3e-203 714.1 884 47.4
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-203 714.1 889 46.3
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 1.8e-202 710.3 886 47.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-201 707.6 889 45.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.0e-200 704.5 923 45.4
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.5e-199 699.9 885 46.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.5e-199 698.7 885 46.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.7e-198 696.4 880 47.4
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.7e-198 696.4 884 45.9
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.8e-197 693.7 886 46.4
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 5.1e-197 692.2 745 51.0
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.5e-196 690.6 878 46.0
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 2.8e-195 686.4 878 45.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 5.3e-194 682.2 880 45.8
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 6.9e-194 681.8 883 45.5
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 9.4e-191 671.4 840 45.2
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 2.7e-190 669.8 882 45.2
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 2.7e-190 669.8 932 44.1
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.6e-190 669.5 747 50.5
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 6.1e-190 668.7 893 45.8
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 5.1e-189 665.6 884 44.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 3.7e-187 659.4 892 43.9
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 7.7e-185 651.7 877 44.8
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.8e-184 649.4 896 43.8
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 5.0e-184 649.0 888 43.7
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 3.2e-183 646.4 893 43.3
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.1e-182 643.7 898 43.1
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.8e-181 640.6 889 42.6
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 5.1e-181 639.0 893 42.9
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 6.7e-181 638.6 893 42.6
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.5e-180 637.5 867 43.1
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 4.4e-180 636.0 889 42.4
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 9.7e-180 634.8 912 43.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.8e-179 633.3 955 41.2
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.1e-178 631.3 895 42.9
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.4e-178 630.9 891 43.0
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.3e-178 629.0 882 41.8
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.0e-177 627.1 938 42.3
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 4.5e-177 625.9 895 42.0
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.2e-176 623.6 876 42.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 8.5e-176 621.7 884 41.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.2e-173 612.5 854 44.1
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 3.3e-172 609.8 893 41.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.3e-171 607.8 896 40.8
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.7e-171 606.3 893 40.8
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 4.1e-170 602.8 698 45.8
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.6e-169 600.9 902 41.7
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.6e-169 600.1 866 42.4
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 2.9e-168 596.7 891 41.0
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 3.8e-168 596.3 878 41.0
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 6.5e-168 595.5 891 41.0
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 4.2e-167 592.8 893 41.1
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.2e-167 592.8 893 41.1
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-166 591.3 893 40.5
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-166 591.3 886 40.9
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 6.1e-166 589.0 952 39.1
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 4.4e-164 582.8 655 50.4
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 4.8e-163 579.3 900 39.9
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 8.3e-163 578.6 881 40.6
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 3.1e-162 576.6 892 40.4
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.2e-161 574.7 853 41.7
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 5.9e-161 572.4 696 44.5
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-159 568.2 890 41.5
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.5e-159 565.8 880 40.6
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 5.5e-159 565.8 887 40.1
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.8e-157 560.8 735 45.3
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.3e-157 560.5 887 39.7
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 7.5e-156 555.4 860 39.5
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.8e-154 550.8 900 39.1
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 4.5e-153 546.2 734 43.7
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.5e-151 541.2 915 38.3
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.8e-150 537.0 883 38.8
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-149 534.6 932 37.3
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.0e-149 533.5 850 39.5
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.0e-149 533.1 843 40.2
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.1e-146 523.1 894 39.9
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.2e-145 521.5 705 42.3
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.4e-138 498.0 703 41.1
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 6.4e-131 472.6 676 41.3
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.9e-128 463.4 696 39.5
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.5e-127 458.8 699 41.1
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.4e-122 444.1 628 43.3
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 1.3e-115 421.8 892 33.4
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.1e-110 404.4 780 34.9
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.9e-106 391.3 884 33.9
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 7.9e-105 386.0 919 33.5
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 3.9e-104 383.6 637 39.1
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.3e-102 378.6 560 42.9
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.3e-95 353.6 546 39.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 3.7e-86 323.9 756 33.5
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.7e-83 315.1 260 63.8
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.1e-81 308.1 237 67.1
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 6.1e-81 306.6 821 30.9
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.0e-80 305.8 283 58.7
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 7.7e-76 289.7 685 30.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.1e-69 269.2 237 58.2
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 5.3e-69 266.9 579 32.1
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.2e-68 265.8 948 26.7
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 2.6e-68 264.6 560 34.6
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.5e-67 260.0 948 27.1
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.5e-67 260.0 948 27.1
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 6.1e-65 253.4 741 27.9
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 5.3e-61 240.4 191 63.9
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 5.3e-61 240.4 234 56.8
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 2.0e-55 221.9 522 30.5
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 2.2e-54 218.4 186 60.2
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 2.2e-54 218.4 201 51.7
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 3.0e-48 198.0 785 27.8
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.4e-47 194.5 205 54.1
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 5.7e-47 193.7 352 34.1
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.3e-46 192.6 185 53.0
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.7e-43 182.2 217 47.0
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 6.5e-43 180.3 143 62.2
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.1e-42 179.5 318 35.8
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 4.7e-41 174.1 297 38.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.6e-35 153.3 205 40.0
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 2.5e-34 151.8 147 55.1
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.4e-32 146.0 158 49.4
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.3e-30 139.4 188 42.0
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 5.4e-29 134.0 218 38.1
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 5.4e-29 134.0 108 59.3
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.3e-26 124.4 217 37.3
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.0e-24 117.9 289 31.1
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.0e-23 115.5 232 32.8
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 9.8e-23 113.2 221 32.1
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 2.2e-22 112.1 82 70.7
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 9.2e-21 106.7 90 67.8
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.0e-20 105.5 198 36.4
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 3.3e-18 98.2 94 50.0
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 5.6e-18 97.4 82 54.9
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 4.7e-17 94.4 93 48.4
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 1.4e-16 92.8 226 29.2
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 6.8e-16 90.5 158 34.2
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 3.5e-12 78.2 114 36.8
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 6.0e-12 77.4 186 31.7
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.3e-08 65.5 88 36.4
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.0e-08 64.7 114 37.7
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.6e-07 62.0 174 29.9


User provided reference genes

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