Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 5.0e-99 364.8 233 100.0
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.0e-14 84.7 203 33.0
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 1.5e-13 80.9 216 31.5
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 4.2e-13 79.3 203 32.5
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 6.1e-12 75.5 203 27.1
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 1.8e-11 73.9 220 28.2
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 2.3e-11 73.6 205 30.7
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 4.0e-11 72.8 223 27.4
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 6.7e-11 72.0 133 39.1
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 8.8e-11 71.6 83 48.2
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 8.8e-11 71.6 191 27.7
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 1.5e-10 70.9 111 39.6
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 1.5e-10 70.9 208 29.8
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.5e-10 70.9 208 29.3
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 4.4e-10 69.3 187 29.9
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 4.4e-10 69.3 74 47.3
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 5.7e-10 68.9 86 51.2
Dinv28182 Davidia involucrata HOM05D008015 ORTHO05D009180 7.5e-10 68.6 64 53.1
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 1.3e-09 67.8 134 36.6
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 2.2e-09 67.0 80 46.2
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 2.2e-09 67.0 66 47.0
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 2.8e-09 66.6 191 29.3
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 2.8e-09 66.6 191 29.3
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 3.7e-09 66.2 204 28.9
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 4.8e-09 65.9 72 47.2
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 4.8e-09 65.9 60 53.3
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 6.3e-09 65.5 58 53.4
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 8.2e-09 65.1 251 27.1
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 1.8e-08 63.9 118 36.4
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 7.0e-08 62.0 193 26.4
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 7.0e-08 62.0 61 54.1
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 9.1e-08 61.6 121 32.2
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 9.1e-08 61.6 213 24.9
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 9.1e-08 61.6 72 45.8
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 1.2e-07 61.2 215 27.4
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.0e-07 60.5 61 44.3
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 2.0e-07 60.5 233 26.6
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 2.0e-07 60.5 80 43.8
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 3.5e-07 59.7 129 32.6
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.5e-07 59.3 137 30.7
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.5e-07 59.3 113 36.3
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 5.9e-07 58.9 53 54.7
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 5.9e-07 58.9 57 52.6
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 7.7e-07 58.5 50 58.0
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.0e-06 58.2 108 35.2
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.0e-06 58.2 56 48.2
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 1.0e-06 58.2 58 46.6
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 1.3e-06 57.8 82 40.2
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 1.3e-06 57.8 72 44.4
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.7e-06 57.4 61 42.6
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 1.7e-06 57.4 108 35.2
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 2.2e-06 57.0 62 46.8
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 2.2e-06 57.0 108 35.2
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 2.9e-06 56.6 54 50.0
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 2.9e-06 56.6 80 42.5
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 3.8e-06 56.2 108 34.3
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 5.0e-06 55.8 59 45.8
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 5.0e-06 55.8 55 45.5
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 5.0e-06 55.8 108 34.3
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 5.0e-06 55.8 108 34.3
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 5.0e-06 55.8 108 34.3
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 5.0e-06 55.8 108 34.3
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 5.0e-06 55.8 55 47.3
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 6.5e-06 55.5 53 47.2
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 8.5e-06 55.1 55 47.3


User provided reference genes

Program Settings