Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 1.1e-276 956.1 481 100.0
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 1.6e-195 686.4 438 77.2
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 2.0e-195 686.0 441 76.6
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 1.5e-193 679.9 441 78.2
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 1.2e-192 676.8 435 77.7
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 3.6e-192 675.2 438 74.9
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 4.7e-192 674.9 443 76.1
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 1.8e-191 672.9 448 75.4
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 3.0e-191 672.2 439 76.3
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 6.8e-191 671.0 435 75.6
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 2.0e-190 669.5 441 74.6
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 2.6e-190 669.1 441 74.4
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.4e-190 668.7 442 75.1
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 7.5e-190 667.5 441 75.5
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 9.8e-190 667.2 446 73.8
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 4.9e-189 664.8 435 75.2
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 8.3e-189 664.1 443 73.4
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 1.1e-188 663.7 442 75.3
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 1.8e-188 662.9 443 73.6
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.5e-187 658.3 444 74.1
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 7.8e-187 657.5 435 75.9
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 1.3e-186 656.8 465 72.9
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 8.6e-186 654.1 437 75.1
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 1.5e-185 653.3 448 73.2
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 5.6e-185 651.4 438 74.2
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 5.6e-185 651.4 436 74.3
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 5.6e-185 651.4 443 74.3
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 7.3e-185 651.0 444 73.4
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 9.5e-185 650.6 428 75.7
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 1.2e-184 650.2 438 74.0
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.6e-184 649.8 437 74.4
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 2.1e-184 649.4 439 74.3
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 2.8e-184 649.0 438 73.1
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 6.1e-184 647.9 446 72.0
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.8e-183 646.4 438 74.7
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 1.8e-183 646.4 435 74.3
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 4.0e-183 645.2 433 74.1
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 8.9e-183 644.0 435 74.5
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.2e-182 643.7 429 75.3
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 1.2e-182 643.7 442 71.3
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 2.0e-182 642.9 428 74.5
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 7.5e-182 641.0 461 71.4
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 3.7e-181 638.6 438 72.8
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 3.7e-181 638.6 435 73.1
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 6.4e-181 637.9 441 73.5
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 2.4e-180 636.0 446 70.6
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 2.4e-180 636.0 438 73.1
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 3.2e-180 635.6 443 69.1
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 4.1e-180 635.2 449 70.2
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 5.4e-180 634.8 438 73.1
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 1.6e-179 633.3 438 72.4
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 1.6e-179 633.3 429 73.2
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 2.7e-179 632.5 440 71.6
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 2.7e-179 632.5 437 73.2
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 2.3e-178 629.4 435 69.9
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 5.0e-178 628.2 445 71.2
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 1.5e-177 626.7 441 71.4
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 1.5e-177 626.7 435 72.6
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 3.3e-177 625.5 443 68.2
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.1e-176 622.9 442 70.6
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 8.0e-176 620.9 439 70.8
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.2e-174 617.1 440 70.5
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 7.5e-174 614.4 435 70.8
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 2.1e-171 606.3 446 68.4
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 2.7e-171 605.9 443 67.5
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 6.0e-171 604.7 435 70.1
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 6.0e-171 604.7 449 69.0
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 8.6e-170 600.9 442 67.9
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 1.1e-169 600.5 499 64.5
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 1.5e-169 600.1 444 67.6
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 3.3e-169 599.0 450 66.7
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 4.3e-169 598.6 445 68.1
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 7.3e-169 597.8 438 68.5
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 1.6e-168 596.7 442 67.4
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 4.7e-168 595.1 442 67.2
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 4.7e-168 595.1 445 67.9
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 1.1e-167 594.0 434 68.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 2.3e-167 592.8 439 68.1
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 2.3e-167 592.8 439 68.1
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 7.5e-166 587.8 438 67.8
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 7.5e-166 587.8 438 67.8
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.9e-165 585.9 447 66.7
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 2.7e-163 579.3 451 65.9
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 3.5e-163 578.9 437 68.0
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 2.4e-159 566.2 443 64.6
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 2.4e-159 566.2 444 64.4
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 8.9e-159 564.3 454 65.6
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 2.6e-158 562.8 366 75.7
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 2.2e-157 559.7 447 63.1
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.1e-156 557.4 432 63.4
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 7.8e-155 551.2 444 64.2
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.8e-152 542.7 451 62.3
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 1.1e-151 540.8 434 65.4
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 5.3e-151 538.5 441 64.4
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 9.0e-151 537.7 455 61.8
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 5.8e-150 535.0 389 69.4
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 5.1e-146 521.9 349 76.2
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 1.5e-145 520.4 341 75.4
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 4.6e-139 498.8 440 58.6
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 7.9e-139 498.0 346 72.5
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 3.7e-136 489.2 435 59.8
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 5.8e-134 481.9 452 58.0
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 7.6e-134 481.5 352 70.7
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 1.1e-127 461.1 444 51.6
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 3.8e-125 452.6 359 64.9
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 7.1e-124 448.4 438 50.7
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 4.3e-121 439.1 437 51.3
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 2.8e-120 436.4 431 52.0
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 6.3e-120 435.3 304 72.7
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 2.4e-119 433.3 290 74.5
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 1.0e-117 427.9 328 65.5
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 3.7e-88 329.7 314 52.9
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 9.1e-87 325.1 455 40.2
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 6.5e-85 318.9 209 76.1
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 2.5e-84 317.0 277 63.2
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 5.4e-71 272.7 215 60.5
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.9e-69 266.9 333 45.0
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.2e-50 203.0 161 63.4
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 1.7e-40 171.4 402 31.8
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-37 161.8 205 45.9
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 8.1e-35 152.5 102 75.5
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 5.8e-33 146.4 118 61.0
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.1e-19 101.3 91 57.1
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 6.2e-19 99.8 113 38.9
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 1.4e-18 98.6 62 74.2
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 9.0e-18 95.9 98 42.9
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 1.8e-13 81.6 64 57.8
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 5.3e-10 70.1 44 72.7
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 1.7e-08 65.1 39 74.4
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 4.2e-07 60.5 74 50.0
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 9.3e-07 59.3 36 72.2
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.3e-07 59.3 63 49.2
Cfa022434 Carpinus fangiana HOM05D006332 ORTHO05D121602 1.2e-06 58.9 317 24.0


User provided reference genes

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