Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 4.0e-162 574.7 294 100.0
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 3.1e-93 345.9 309 62.8
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 2.6e-84 316.2 312 58.7
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.1e-82 310.8 299 58.2
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 4.1e-82 308.9 304 57.9
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 5.4e-82 308.5 269 61.7
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 7.1e-82 308.1 318 55.3
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.2e-81 307.4 205 74.1
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.1e-81 306.6 316 57.3
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.1e-81 306.6 229 69.0
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.5e-81 305.8 305 57.4
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.6e-81 305.4 298 58.1
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.0e-80 304.3 314 57.6
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.0e-80 304.3 315 54.3
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.0e-80 304.3 297 58.2
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 1.7e-80 303.5 300 57.7
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 6.6e-80 301.6 271 60.5
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 8.6e-80 301.2 295 57.6
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 8.6e-80 301.2 298 58.4
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 8.6e-80 301.2 298 57.4
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.1e-79 300.8 299 57.9
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.5e-79 300.4 298 54.7
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.9e-79 300.1 186 78.5
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 4.3e-79 298.9 251 63.3
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 5.6e-79 298.5 304 54.3
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.8e-78 296.2 325 53.8
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 3.6e-78 295.8 252 62.3
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 3.6e-78 295.8 246 61.8
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 4.7e-78 295.4 313 53.7
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 8.1e-78 294.7 186 75.8
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.4e-77 293.9 193 74.1
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 1.8e-77 293.5 252 59.9
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 2.3e-77 293.1 200 71.0
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.3e-77 293.1 316 53.8
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 5.2e-77 292.0 293 56.0
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 5.2e-77 292.0 261 60.5
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 6.8e-77 291.6 289 56.1
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 6.8e-77 291.6 207 70.0
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 8.9e-77 291.2 207 70.5
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.0e-76 290.0 297 54.5
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.6e-76 289.7 252 62.7
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 2.6e-76 289.7 207 69.6
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 4.4e-76 288.9 185 73.0
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 5.8e-76 288.5 282 55.3
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.8e-76 288.5 318 53.1
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 7.6e-76 288.1 205 68.8
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 9.9e-76 287.7 236 63.6
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.3e-75 287.3 296 52.0
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.7e-75 287.0 311 50.2
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.7e-75 287.0 297 52.9
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.7e-75 287.0 207 69.1
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 2.2e-75 286.6 295 52.9
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 2.2e-75 286.6 186 72.0
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.9e-75 286.2 295 51.9
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 4.9e-75 285.4 193 71.0
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 8.4e-75 284.6 201 68.7
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.1e-74 284.3 184 74.5
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.4e-74 283.9 211 65.4
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.4e-74 283.9 211 65.4
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 3.2e-74 282.7 207 67.6
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 3.2e-74 282.7 258 61.2
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 4.1e-74 282.3 306 50.0
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 4.1e-74 282.3 187 72.7
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.1e-74 282.3 208 66.3
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.6e-73 280.4 208 65.9
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 2.1e-73 280.0 201 71.6
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.7e-73 279.6 208 67.8
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 3.5e-73 279.3 186 69.9
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 6.0e-73 278.5 185 73.0
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 7.8e-73 278.1 258 59.7
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.3e-72 277.3 179 74.9
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.7e-72 276.9 167 77.8
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 1.7e-72 276.9 195 71.3
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 2.3e-72 276.6 186 70.4
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 3.9e-72 275.8 282 55.7
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 3.9e-72 275.8 313 53.0
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 5.1e-72 275.4 178 73.0
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 5.1e-72 275.4 198 71.2
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.5e-71 273.9 286 54.2
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.5e-71 273.9 178 73.0
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.5e-71 273.9 194 70.6
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 2.5e-71 273.1 189 71.4
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 3.3e-71 272.7 282 53.9
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 4.3e-71 272.3 185 71.9
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 5.6e-71 271.9 191 69.1
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 7.3e-71 271.6 186 71.0
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 9.6e-71 271.2 215 64.2
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 3.6e-70 269.2 314 52.5
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 4.7e-70 268.9 302 49.7
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.8e-69 266.9 248 56.0
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 2.4e-69 266.5 296 50.7
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 4.0e-69 265.8 194 69.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.2e-69 265.4 247 57.5
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.2e-69 265.4 247 57.5
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 8.9e-69 264.6 186 68.3
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 8.9e-69 264.6 227 62.1
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.5e-68 263.8 260 56.2
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 2.0e-68 263.5 195 66.2
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 2.0e-68 263.5 213 64.8
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.6e-68 263.1 202 66.3
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 6.4e-67 258.5 295 51.5
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 8.4e-67 258.1 169 74.0
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 8.4e-67 258.1 195 66.7
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 2.4e-66 256.5 194 70.1
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.2e-65 254.2 271 51.3
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 6.0e-65 251.9 186 66.7
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.0e-64 251.1 211 62.1
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.0e-64 249.6 226 59.3
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 1.3e-62 244.2 187 66.3
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 2.6e-60 236.5 159 69.2
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 4.5e-60 235.7 237 54.4
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.6e-57 227.3 188 63.3
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 5.1e-56 222.2 189 57.1
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.1e-54 216.9 175 58.9
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 4.8e-54 215.7 136 73.5
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 3.1e-53 213.0 194 58.8
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.2e-52 211.1 151 70.2
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.7e-51 207.2 156 66.0
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 3.2e-50 203.0 204 54.4
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 4.2e-50 202.6 164 62.8
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 4.2e-50 202.6 136 72.1
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 2.5e-47 193.4 156 63.5
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.4e-44 183.0 109 78.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 1.1e-42 177.9 110 75.5
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 9.0e-37 158.3 93 81.7
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.3e-35 154.5 250 41.6
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 7.9e-33 145.2 180 51.7
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 2.2e-30 137.1 91 67.0
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 5.3e-29 132.5 223 39.5
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 2.1e-25 120.6 132 43.2
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 2.7e-25 120.2 213 35.7
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 6.1e-25 119.0 121 50.4
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 6.1e-25 119.0 135 43.0
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.1e-24 115.9 137 51.8
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.1e-24 115.9 137 51.8
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 6.3e-22 109.0 80 68.8
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.4e-18 97.8 78 62.8
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.0e-15 87.4 130 50.0
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 3.1e-13 80.1 111 45.0
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.2e-11 73.9 41 75.6
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.2e-09 68.2 52 59.6
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 2.7e-09 67.0 104 50.0
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 6.7e-08 62.4 56 60.7


User provided reference genes

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