Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 2.4e-284 981.5 491 100.0
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 1.2e-198 696.8 486 70.6
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 3.4e-198 695.3 476 72.9
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 2.5e-196 689.1 489 71.2
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.7e-195 685.6 468 73.9
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 6.0e-195 684.5 466 73.6
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.3e-192 676.8 471 72.4
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 3.7e-192 675.2 466 73.0
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 1.1e-191 673.7 483 70.2
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.4e-190 668.7 502 69.5
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 7.7e-190 667.5 492 68.7
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 7.7e-190 667.5 479 69.1
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.0e-189 667.2 484 70.2
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.0e-189 667.2 482 70.3
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.7e-189 666.4 473 71.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 3.8e-189 665.2 478 70.1
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 6.5e-189 664.5 502 68.1
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 1.1e-188 663.7 503 68.6
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 1.9e-188 662.9 470 70.9
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 2.5e-188 662.5 481 68.4
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 9.4e-188 660.6 479 69.9
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 9.4e-188 660.6 478 69.5
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 2.1e-187 659.4 479 68.3
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 2.7e-187 659.1 479 70.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 4.6e-187 658.3 469 71.6
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 6.1e-187 657.9 479 69.5
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 7.9e-187 657.5 471 69.9
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.8e-186 656.4 477 69.6
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.3e-186 656.0 477 71.1
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 2.3e-186 656.0 467 70.0
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.3e-186 656.0 482 68.3
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 3.0e-186 655.6 470 71.3
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 3.9e-186 655.2 481 70.7
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 8.8e-186 654.1 467 70.0
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.2e-184 649.4 479 69.7
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 3.7e-184 648.7 476 68.3
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 2.4e-183 646.0 473 68.5
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 2.6e-182 642.5 466 70.8
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.6e-182 642.5 480 68.8
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.4e-182 642.1 478 68.8
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 5.9e-182 641.3 481 67.8
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 1.0e-181 640.6 498 66.1
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 8.5e-181 637.5 484 68.4
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.5e-180 636.0 482 67.2
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 4.7e-179 631.7 468 67.9
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 1.1e-177 627.1 467 67.5
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 2.0e-177 626.3 467 66.8
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 2.6e-177 625.9 478 67.6
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.3e-176 623.6 467 67.5
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.3e-176 623.6 467 67.5
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.7e-176 623.2 468 66.5
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 1.7e-176 623.2 473 67.0
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.1e-175 620.5 467 66.8
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.4e-175 619.4 482 66.0
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 4.1e-175 618.6 475 65.1
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 5.3e-175 618.2 466 66.1
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.0e-173 614.0 469 66.7
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 3.8e-173 612.1 466 66.1
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 3.6e-171 605.5 478 64.4
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 4.7e-171 605.1 519 60.9
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 6.7e-170 601.3 464 66.6
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 8.8e-170 600.9 461 66.4
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.5e-169 600.1 462 66.2
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 7.4e-169 597.8 441 69.6
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 9.7e-169 597.4 470 65.5
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 8.2e-168 594.3 477 64.6
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.2e-166 590.5 468 63.9
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.7e-165 586.6 469 64.4
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 5.5e-164 581.6 491 61.1
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 1.6e-163 580.1 465 64.9
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.1e-163 579.7 479 61.6
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 1.0e-162 577.4 460 64.3
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.8e-162 576.6 479 63.9
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 4.4e-161 572.0 456 66.0
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 5.7e-161 571.6 464 63.4
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 3.7e-160 568.9 492 60.2
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 6.3e-160 568.2 478 61.1
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 1.0e-157 560.8 468 62.4
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 2.2e-157 559.7 472 62.3
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.1e-155 553.1 474 62.4
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.4e-154 550.4 469 61.8
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.3e-152 543.9 462 59.7
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 3.7e-152 542.3 544 52.4
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.3e-149 533.9 488 60.2
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 2.9e-149 532.7 456 62.5
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 8.6e-149 531.2 394 67.8
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.3e-146 523.1 465 57.4
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 2.0e-145 520.0 470 59.1
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 4.1e-143 512.3 467 58.9
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 7.0e-143 511.5 483 56.1
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.9e-141 506.1 523 54.7
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 8.6e-141 504.6 524 51.9
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.6e-140 501.9 469 59.3
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.0e-138 497.7 361 69.5
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 5.2e-138 495.4 401 65.1
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.5e-137 493.8 381 66.7
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.9e-136 489.6 401 64.3
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 2.4e-135 486.5 268 84.0
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 7.0e-135 485.0 441 59.9
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.7e-133 480.3 473 55.8
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 5.6e-132 475.3 484 52.7
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 1.2e-131 474.2 544 49.1
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 6.2e-123 445.3 494 54.5
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.8e-122 443.7 842 36.5
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.5e-121 440.7 453 54.7
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 2.0e-121 440.3 510 48.0
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 9.9e-121 438.0 262 78.2
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 2.1e-115 420.2 415 57.8
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 2.1e-107 393.7 332 63.3
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 8.4e-104 381.7 468 48.1
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.1e-100 371.3 471 47.1
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 1.2e-97 361.3 384 55.7
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-94 351.3 624 36.9
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.6e-94 350.9 420 51.9
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 6.2e-91 339.0 226 67.7
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 5.1e-85 319.3 334 53.0
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 2.9e-80 303.5 465 38.5
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 4.2e-79 299.7 191 72.8
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 5.3e-74 282.7 456 36.4
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.9e-63 247.7 143 81.1
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 3.2e-63 246.9 281 44.8
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 1.4e-58 231.5 123 86.2
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 2.4e-58 230.7 298 41.9
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.6e-57 227.3 384 41.4
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.4e-53 214.9 284 39.4
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.3e-48 198.4 113 78.8
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.7e-41 174.1 106 76.4
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.1e-34 152.1 86 81.4
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 3.5e-25 120.6 76 76.3
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 8.9e-21 105.9 60 78.3
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 5.4e-18 96.7 81 58.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 7.8e-17 92.8 69 55.1
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 1.6e-14 85.1 59 61.0
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 6.2e-14 83.2 46 82.6
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 8.9e-13 79.3 41 82.9
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 3.7e-11 73.9 94 45.7
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 8.3e-11 72.8 49 69.4
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 5.4e-10 70.1 45 73.3
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 2.7e-09 67.8 42 76.2


User provided reference genes

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