Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 2.8e-71 271.9 147 100.0
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 5.1e-57 224.6 146 82.2
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.1e-56 223.4 145 80.0
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 2.5e-56 222.2 147 82.3
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 5.7e-56 221.1 145 77.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 5.7e-56 221.1 145 79.3
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 5.7e-56 221.1 146 80.1
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 9.7e-56 220.3 146 81.5
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 9.7e-56 220.3 146 81.5
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 9.7e-56 220.3 146 81.5
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 9.7e-56 220.3 146 78.1
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 145 80.7
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.3e-55 219.9 140 80.0
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.3e-55 219.9 140 80.0
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 1.7e-55 219.5 146 80.1
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 2.2e-55 219.2 145 77.2
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.2e-55 219.2 142 79.6
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.2e-55 219.2 145 79.3
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 2.2e-55 219.2 146 78.8
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 3.7e-55 218.4 146 77.4
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 4.8e-55 218.0 142 81.7
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 4.8e-55 218.0 137 84.7
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 6.3e-55 217.6 145 78.6
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 6.3e-55 217.6 146 78.1
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.1e-54 216.9 146 80.1
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.1e-54 216.9 146 76.7
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.1e-54 216.9 145 78.6
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.1e-54 216.9 142 78.9
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.1e-54 216.9 142 78.9
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.1e-54 216.9 142 80.3
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.8e-54 216.1 145 76.6
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.1e-54 215.3 143 80.4
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 5.3e-54 214.5 140 80.7
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 5.3e-54 214.5 137 80.3
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 6.9e-54 214.2 145 77.9
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 6.9e-54 214.2 145 75.9
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.2e-53 213.4 146 78.1
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 1.5e-53 213.0 142 78.2
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.5e-53 213.0 141 78.0
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.5e-53 213.0 137 78.8
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.5e-53 213.0 143 76.9
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.5e-53 213.0 141 78.7
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 2.0e-53 212.6 142 77.5
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.0e-53 212.6 144 78.5
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.6e-53 212.2 145 75.2
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.6e-53 212.2 141 79.4
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 2.6e-53 212.2 137 79.6
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 2.6e-53 212.2 141 79.4
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 2.6e-53 212.2 141 79.4
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 3.4e-53 211.8 137 81.0
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.5e-53 211.5 145 77.2
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 7.7e-53 210.7 142 77.5
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.0e-52 210.3 136 80.1
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.0e-52 210.3 142 77.5
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.0e-52 210.3 142 77.5
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.0e-52 210.3 145 76.6
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.0e-52 210.3 136 79.4
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.3e-52 209.9 144 77.1
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 76.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.3e-52 209.9 136 79.4
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.7e-52 209.5 146 75.3
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.7e-52 209.5 137 78.8
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.2e-52 209.1 145 73.8
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 2.2e-52 209.1 141 75.9
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 2.2e-52 209.1 145 73.8
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 2.9e-52 208.8 146 76.7
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.9e-52 208.8 145 75.9
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 2.9e-52 208.8 136 78.7
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 3.8e-52 208.4 141 78.7
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.8e-52 208.4 141 78.7
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.8e-52 208.4 141 78.0
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.8e-52 208.4 141 78.0
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 3.8e-52 208.4 141 76.6
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.0e-52 208.0 145 75.9
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.0e-52 208.0 145 75.2
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 5.0e-52 208.0 136 78.7
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 6.5e-52 207.6 140 77.1
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 8.5e-52 207.2 141 78.0
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.1e-51 206.8 141 76.6
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.9e-51 206.1 145 78.6
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 1.9e-51 206.1 145 74.5
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.9e-51 206.1 146 75.3
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 2.5e-51 205.7 137 80.3
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.5e-51 205.7 145 74.5
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 3.2e-51 205.3 146 73.3
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 7.2e-51 204.1 137 77.4
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 7.2e-51 204.1 139 77.0
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 7.2e-51 204.1 133 82.0
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 7.2e-51 204.1 140 76.4
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 9.4e-51 203.8 136 77.2
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 9.4e-51 203.8 145 74.5
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.2e-50 203.4 145 72.4
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 2.1e-50 202.6 145 73.8
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 6.1e-50 201.1 139 73.4
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 7.9e-50 200.7 139 73.4
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 2.3e-49 199.1 137 76.6
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.3e-49 199.1 146 71.2
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.9e-49 198.4 146 70.5
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 5.1e-49 198.0 145 69.7
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 6.7e-49 197.6 137 75.9
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 8.8e-49 197.2 146 71.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.1e-48 196.8 145 68.3
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 1.7e-47 193.0 142 71.1
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 2.2e-47 192.6 145 71.7
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.1e-46 190.3 145 66.9
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.1e-46 190.3 121 83.5
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 1.2e-45 186.8 146 69.2
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 1.3e-44 183.3 137 67.9
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 1.3e-44 183.3 137 67.9
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 1.3e-44 183.3 137 67.9
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 1.3e-44 183.3 118 80.5
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 2.2e-44 182.6 137 67.9
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 3.8e-44 181.8 148 70.3
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 5.0e-44 181.4 134 68.7
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.1e-43 180.3 137 67.2
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.9e-43 179.5 135 68.9
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 3.2e-43 178.7 137 66.4
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 3.2e-43 178.7 137 66.4
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 3.2e-43 178.7 137 69.3
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 5.5e-43 177.9 137 66.4
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 5.5e-43 177.9 137 65.0
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.6e-42 176.4 136 66.9
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.1e-42 176.0 139 66.2
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.1e-42 176.0 120 75.8
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 2.7e-42 175.6 147 65.3
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 3.0e-41 172.2 145 64.8
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 3.9e-41 171.8 137 66.4
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 3.9e-41 171.8 137 66.4
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 5.2e-41 171.4 147 65.3
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 5.2e-41 171.4 147 66.7
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 6.7e-41 171.0 147 66.7
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 3.3e-40 168.7 146 60.3
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.1e-38 162.2 150 61.3
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.1e-35 153.7 140 59.3
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 5.5e-35 151.4 147 59.9
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.3e-31 140.2 135 57.8
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 8.2e-31 137.5 133 57.9
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.4e-30 136.0 118 61.9
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 5.0e-28 128.3 138 54.3
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.2e-24 117.1 105 63.8
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.4e-24 115.5 90 70.0
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 2.0e-21 106.3 96 62.5
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 8.6e-20 100.9 141 42.6
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 8.6e-20 100.9 138 39.9
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.1e-14 84.0 88 50.0
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 4.3e-11 72.0 50 70.0


User provided reference genes

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