Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.2e-65 253.1 128 100.0
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 4.8e-51 204.5 129 81.4
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 4.1e-50 201.4 130 82.3
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.3e-50 201.1 132 81.1
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 6.9e-50 200.7 129 81.4
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 6.9e-50 200.7 128 79.7
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 9.0e-50 200.3 130 80.8
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 1.2e-49 199.9 130 79.2
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.0e-48 196.8 129 78.3
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.3e-48 196.4 131 79.4
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-48 196.1 130 80.0
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.2e-48 195.7 129 79.8
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 2.9e-48 195.3 128 76.6
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.9e-48 195.3 131 81.7
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.8e-48 194.9 130 79.2
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 8.4e-48 193.7 129 79.1
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 8.4e-48 193.7 130 78.5
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.1e-47 193.4 129 76.7
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.1e-47 193.4 126 77.8
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.1e-47 193.4 126 77.8
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.1e-47 193.4 129 77.5
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.4e-47 193.0 129 78.3
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.4e-47 193.0 129 76.7
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.5e-47 192.2 129 79.1
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 3.2e-47 191.8 129 78.3
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.2e-47 191.8 129 78.3
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 4.2e-47 191.4 128 78.1
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 4.2e-47 191.4 133 78.2
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 4.2e-47 191.4 129 76.7
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 7.1e-47 190.7 126 78.6
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 7.1e-47 190.7 130 76.2
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 7.1e-47 190.7 130 76.2
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.2e-46 189.9 128 77.3
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 2.1e-46 189.1 129 76.7
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 2.7e-46 188.7 128 76.6
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 3.5e-46 188.3 133 77.4
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.5e-46 188.3 128 77.3
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 3.5e-46 188.3 129 78.3
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 4.6e-46 188.0 129 79.8
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 4.6e-46 188.0 128 76.6
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 7.9e-46 187.2 132 75.8
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.0e-45 186.8 128 78.1
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.3e-45 185.7 130 79.2
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 3.0e-45 185.3 129 76.7
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 3.0e-45 185.3 129 76.7
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 3.9e-45 184.9 131 74.0
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 3.9e-45 184.9 131 74.0
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.1e-45 184.5 130 73.8
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 5.1e-45 184.5 131 74.0
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 5.1e-45 184.5 131 74.0
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 6.7e-45 184.1 129 75.2
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.5e-44 183.0 131 75.6
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.5e-44 183.0 130 76.9
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.9e-44 182.6 130 75.4
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.9e-44 182.6 129 73.6
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.9e-44 182.6 132 73.5
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.5e-44 182.2 134 73.1
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.3e-44 181.8 131 76.3
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 4.3e-44 181.4 130 73.8
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 5.7e-44 181.0 130 76.9
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 5.7e-44 181.0 132 72.7
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 5.7e-44 181.0 129 70.5
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 7.4e-44 180.6 130 72.3
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 7.4e-44 180.6 130 76.2
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 7.4e-44 180.6 130 76.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 9.7e-44 180.3 126 73.0
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 9.7e-44 180.3 129 72.9
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.3e-43 179.9 130 72.3
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.3e-43 179.9 124 73.4
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.3e-43 179.9 130 75.4
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.8e-43 178.7 132 72.7
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 3.7e-43 178.3 132 71.2
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 4.8e-43 177.9 133 72.2
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 4.8e-43 177.9 128 72.7
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 6.3e-43 177.6 132 72.0
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 8.2e-43 177.2 129 73.6
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.4e-42 176.4 130 71.5
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.4e-42 176.4 130 73.8
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 3.1e-42 175.3 128 72.7
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.1e-42 174.9 129 73.6
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 6.9e-42 174.1 130 70.8
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 6.9e-42 174.1 130 70.8
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 6.9e-42 174.1 130 70.8
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 6.9e-42 174.1 136 72.1
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.0e-42 173.7 129 72.9
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.2e-41 173.3 136 69.1
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.5e-41 172.9 130 73.1
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.5e-41 172.9 136 72.1
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.5e-41 172.9 136 69.9
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 128 71.9
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 128 71.9
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.6e-41 172.2 124 72.6
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.5e-41 171.4 129 72.1
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 7.7e-41 170.6 128 69.5
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 1.0e-40 170.2 128 70.3
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 127 74.0
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.3e-40 169.9 123 70.7
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.2e-40 169.1 129 68.2
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 2.9e-40 168.7 130 72.3
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.9e-40 168.7 128 71.1
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 3.8e-40 168.3 131 69.5
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.0e-40 167.9 128 68.8
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.5e-40 167.5 117 72.6
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.9e-39 166.0 114 72.8
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 3.2e-39 165.2 128 69.5
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 4.2e-39 164.9 129 66.7
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 9.4e-39 163.7 98 84.7
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.6e-38 162.9 129 66.7
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.1e-38 162.5 105 80.0
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.6e-38 161.8 97 84.5
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 3.6e-38 161.8 129 69.8
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 4.6e-38 161.4 129 67.4
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.6e-38 161.4 127 68.5
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.6e-38 161.4 127 68.5
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.6e-38 161.4 130 72.3
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.6e-38 161.4 127 68.5
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 6.1e-38 161.0 114 69.3
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 3.9e-37 158.3 103 77.7
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 9.7e-36 153.7 120 68.3
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.3e-35 153.3 128 65.6
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.3e-35 153.3 124 67.7
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 4.8e-35 151.4 109 71.6
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 8.2e-35 150.6 108 70.4
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.1e-34 148.3 129 68.2
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.2e-33 146.7 85 83.5
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.6e-33 145.6 110 69.1
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 2.6e-33 145.6 113 66.4
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 3.4e-33 145.2 83 85.5
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 4.5e-33 144.8 83 85.5
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.9e-32 142.1 114 67.5
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.5e-32 141.0 130 66.2
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 2.5e-31 139.0 118 66.1
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 7.2e-31 137.5 94 76.6
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 4.7e-30 134.8 127 57.5
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.0e-29 133.7 95 74.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.3e-29 132.5 83 78.3
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.9e-29 131.7 117 62.4
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.1e-28 130.2 90 73.3
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.5e-28 129.8 90 74.4
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 2.4e-26 122.5 110 60.9
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 4.1e-26 121.7 123 60.2
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.5e-25 119.8 69 88.4
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.0e-24 117.1 127 55.9
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 3.6e-22 108.6 104 59.6
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.0e-21 107.1 129 55.8
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.0e-21 105.5 78 66.7
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.2e-21 104.8 92 58.7
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.2e-21 104.8 94 62.8
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 6.7e-21 104.4 73 74.0
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 9.1e-18 94.0 91 51.6
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.2e-17 93.6 114 53.5
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.3e-16 90.1 110 49.1
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.7e-16 89.7 69 63.8
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.8e-13 79.7 68 58.8
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 8.0e-06 54.3 79 44.3


User provided reference genes

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