Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 5.3e-95 351.7 280 100.0
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 4.4e-65 252.3 280 81.1
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.4e-65 252.3 280 81.1
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 7.5e-65 251.5 280 81.1
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.7e-64 250.4 258 86.4
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.2e-64 250.0 264 84.5
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 4.8e-64 248.8 266 83.5
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.4e-63 247.3 272 81.2
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.1e-63 246.1 264 83.7
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 7.0e-63 245.0 275 79.6
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 1.6e-62 243.8 275 80.4
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.6e-62 243.8 250 88.0
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 2.0e-62 243.4 264 83.7
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.7e-62 243.0 266 84.6
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 7.7e-62 241.5 266 83.8
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.0e-61 241.1 266 83.8
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.3e-61 240.7 263 84.0
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.7e-61 240.4 263 83.7
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 2.9e-61 239.6 266 74.8
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 3.8e-61 239.2 266 83.5
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.5e-61 238.4 267 84.3
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 8.5e-61 238.0 266 83.1
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.1e-60 237.7 269 82.2
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.1e-60 237.7 266 83.5
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.1e-60 237.7 266 83.5
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.5e-60 237.3 264 82.6
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.9e-60 236.9 265 84.2
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.9e-60 236.9 265 84.2
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.9e-60 236.9 261 83.5
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.5e-60 236.5 272 79.4
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.5e-60 236.5 267 83.5
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 2.5e-60 236.5 250 87.2
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.5e-60 236.5 266 82.7
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.2e-60 236.1 266 83.8
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 4.2e-60 235.7 264 82.2
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.2e-60 235.7 266 82.3
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 9.4e-60 234.6 266 81.2
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 9.4e-60 234.6 250 85.6
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.6e-59 233.8 251 86.5
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 2.7e-59 233.0 262 82.1
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 2.7e-59 233.0 262 82.1
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.6e-59 232.6 269 81.8
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 6.1e-59 231.9 262 82.1
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 6.1e-59 231.9 262 82.1
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 8.0e-59 231.5 264 78.8
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 8.0e-59 231.5 266 81.2
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.4e-58 230.7 263 82.5
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.8e-58 230.3 250 84.8
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.8e-58 230.3 268 82.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.8e-58 230.3 262 81.7
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 2.3e-58 229.9 264 81.4
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 2.3e-58 229.9 267 80.9
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 5.2e-58 228.8 248 85.5
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.8e-58 228.4 266 82.0
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 8.8e-58 228.0 249 84.3
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 8.8e-58 228.0 265 81.5
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.5e-57 227.3 261 80.8
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 2.0e-57 226.9 252 83.3
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.6e-57 226.5 266 81.2
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.4e-57 226.1 264 80.7
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.4e-57 226.1 264 80.7
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 4.4e-57 225.7 264 80.7
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 4.4e-57 225.7 264 76.1
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 9.8e-57 224.6 269 79.6
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 1.7e-56 223.8 273 79.5
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.8e-56 223.0 267 79.4
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.7e-56 222.6 265 79.6
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 4.9e-56 222.2 262 80.2
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 4.9e-56 222.2 268 79.5
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.1e-55 221.1 266 78.2
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.1e-55 221.1 266 78.2
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.4e-55 220.7 268 79.1
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.8e-55 220.3 262 78.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 2.4e-55 219.9 264 79.9
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 2.4e-55 219.9 250 82.8
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 3.1e-55 219.5 268 78.7
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 4.1e-55 219.2 267 79.8
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 4.1e-55 219.2 268 74.6
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 5.4e-55 218.8 268 78.7
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 7.0e-55 218.4 268 72.0
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 9.1e-55 218.0 268 78.0
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.0e-54 216.9 276 75.7
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 2.7e-54 216.5 268 78.4
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 4.5e-54 215.7 264 79.5
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 5.9e-54 215.3 268 80.2
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 5.9e-54 215.3 266 78.2
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 7.7e-54 214.9 266 78.9
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.0e-53 214.5 265 75.5
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.0e-53 214.5 265 75.5
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.3e-53 214.2 249 82.7
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.7e-53 213.8 269 78.1
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-53 213.4 268 79.1
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 2.3e-53 213.4 268 79.1
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 2.3e-53 213.4 268 79.1
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 2.3e-53 213.4 268 79.1
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.3e-53 213.4 243 85.2
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 2.9e-53 213.0 268 78.7
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 2.9e-53 213.0 260 80.4
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 2.9e-53 213.0 263 77.2
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 6.6e-53 211.8 268 77.6
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 6.6e-53 211.8 266 77.4
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 8.6e-53 211.5 266 77.4
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 8.6e-53 211.5 266 77.4
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 1.9e-52 210.3 266 77.1
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.5e-52 209.9 265 78.9
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 4.2e-52 209.1 267 77.2
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 5.5e-52 208.8 266 78.9
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 7.2e-52 208.4 267 76.8
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.2e-51 207.6 266 76.7
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 2.8e-51 206.5 250 81.2
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.7e-51 205.7 273 51.3
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 8.0e-51 204.9 256 79.3
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 3.0e-50 203.0 268 78.0
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.0e-50 202.6 229 88.6
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 8.9e-50 201.4 265 76.2
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 8.9e-50 201.4 258 77.1
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 8.9e-50 201.4 266 76.7
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 2.0e-49 200.3 249 79.1
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 3.4e-49 199.5 241 83.0
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 7.5e-49 198.4 275 73.5
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 4.9e-48 195.7 266 75.6
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 5.4e-47 192.2 281 73.3
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.0e-46 190.3 267 73.8
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 5.9e-46 188.7 252 75.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.0e-45 188.0 272 64.3
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.3e-45 187.6 264 68.9
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.3e-45 187.6 268 71.3
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.7e-45 187.2 271 74.5
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.7e-45 187.2 276 72.8
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.3e-45 186.8 276 42.4
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.3e-44 183.0 228 83.8
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 3.3e-44 183.0 257 73.5
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 4.3e-44 182.6 259 73.0
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 9.5e-44 181.4 242 79.3
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.2e-43 181.0 229 84.3
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 2.1e-43 180.3 229 83.0
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.7e-43 179.1 235 83.0
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 2.6e-41 173.3 267 72.3
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.9e-40 169.9 250 73.2
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-36 157.5 249 58.6
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 4.7e-35 152.5 200 86.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.4e-34 151.0 83 86.7
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-33 147.5 239 74.9
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.6e-30 136.0 276 64.5
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 8.6e-29 131.7 207 80.2
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 7.3e-28 128.6 85 74.1
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 9.5e-28 128.3 215 78.6
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.2e-27 127.9 91 71.4
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.7e-27 125.9 266 64.7
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 6.2e-27 125.6 264 54.9
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.0e-25 120.6 95 64.2
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 3.7e-24 116.3 266 57.1
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 9.2e-23 111.7 86 66.3
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.2e-19 101.3 74 67.6
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.1e-19 100.5 82 58.5
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 3.0e-13 80.1 53 75.5
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 6.4e-08 62.4 228 59.2
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.1e-07 61.6 59 52.5
AagrBONN_evm.TU.Sc2ySwM_344.3554 Anthoceros agrestis HOM05D000094 ORTHO05D001056 9.3e-07 58.5 101 35.6
PGR102G2378 Punica granatum HOM05D000094 ORTHO05D002904 9.3e-07 58.5 104 38.5
Rhsim07G0201500 Rhododendron simsii HOM05D000094 ORTHO05D002904 2.1e-06 57.4 94 40.4
BcaC06g30915 Brassica carinata HOM05D000094 ORTHO05D001056 2.7e-06 57.0 101 35.6
TWI36G1630 Tripterygium wilfordii HOM05D000094 ORTHO05D002904 2.7e-06 57.0 96 34.4
Os05g0399800 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D001056 7.9e-06 55.5 97 42.3


User provided reference genes

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